RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SPATA12Q7Z6I5 190 aa13.41□□□□□ -0.26
NUP88-203ENST00000572019 RBKSQ9H477 322 aa13.41□□□□□ -0.26
NUP88-203ENST00000572019 IGKV1OR2-108A0A075B7D4 117 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 CRYM-AS1A6NIL9 109 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 M0R2Z0 102 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 ISLRO14498 428 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 B3GALNT1O75752 331 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 NUDT3O95989 172 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 DEFB130BP0DP73 79 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 DEFB130AP0DP74 79 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 KRTAP10-2P60368 255 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 SPINK13Q1W4C9 94 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 IGF2BP2-AS1Q96M15 143 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 SLC25A32Q9H2D1 315 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 DOK5Q9P104 306 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 TMEM56-RWDD3S4R434 201 aa13.4□□□□□ -0.26
NUP88-203ENST00000572019 F5H768 121 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 TNFAIP8O95379 198 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 SULT1A3P0DMM9 295 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 SULT1A4P0DMN0 295 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 PRB4P10163 310 aaPredicted RBP13.39□□□□□ -0.27
NUP88-203ENST00000572019 TAS2R19P59542 299 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 C1orf194Q5T5A4 169 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 GPR107Q5VW38 600 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 SPATA31B1PQ5VZV4 182 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 BAP18Q8IXM2 172 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 OR8I2Q8N0Y5 310 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 LGI3Q8N145 548 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 TMEM208Q9BTX3 173 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 NAA50Q9GZZ1 169 aaKnown RBP13.39□□□□□ -0.27
NUP88-203ENST00000572019 HSPB7Q9UBY9 170 aa13.39□□□□□ -0.27
NUP88-203ENST00000572019 C14orf166Q9Y224 244 aaKnown RBP13.39□□□□□ -0.27
NUP88-203ENST00000572019 OR11H7Q8NGC8 314 aa13.38□□□□□ -0.27
NUP88-203ENST00000572019 DTD1Q8TEA8 209 aa13.38□□□□□ -0.27
NUP88-203ENST00000572019 MIXL1Q9H2W2 232 aa13.38□□□□□ -0.27
NUP88-203ENST00000572019 GPR132Q9UNW8 380 aa13.38□□□□□ -0.27
NUP88-203ENST00000572019 NUP62P37198 522 aaPredicted RBP13.37□□□□□ -0.27
NUP88-203ENST00000572019 CNN1P51911 297 aaKnown RBP13.37□□□□□ -0.27
NUP88-203ENST00000572019 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.37□□□□□ -0.27
NUP88-203ENST00000572019 RNF141Q8WVD5 230 aa13.37□□□□□ -0.27
NUP88-203ENST00000572019 PPP1R14BQ96C90 147 aa13.37□□□□□ -0.27
NUP88-203ENST00000572019 C16orf92Q96LL3 132 aa13.37□□□□□ -0.27
NUP88-203ENST00000572019 RPRMQ9NS64 109 aa13.37□□□□□ -0.27
NUP88-203ENST00000572019 U3KQ87 197 aa13.37□□□□□ -0.27
NUP88-203ENST00000572019 TRAV12-2A0A075B6T6 113 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 TRAV8-2A0A0B4J237 113 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 ALDH3B2P48448 385 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 TMEM182Q6ZP80 229 aaPredicted RBP13.36□□□□□ -0.27
NUP88-203ENST00000572019 LYZL2Q7Z4W2 148 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 NOXA1Q86UR1 476 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 RNF182Q8N6D2 247 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 OR4C16Q8NGL9 310 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 RSG1Q9BU20 258 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 SLC25A22Q9H936 323 aa13.36□□□□□ -0.27
NUP88-203ENST00000572019 A0A087WXM4 84 aa13.35□□□□□ -0.27
NUP88-203ENST00000572019 LYRM9A8MSI8 78 aa13.35□□□□□ -0.27
NUP88-203ENST00000572019 SNRPGP15A8MWD9 76 aa13.35□□□□□ -0.27
NUP88-203ENST00000572019 SLC35E1Q96K37 410 aa13.35□□□□□ -0.27
NUP88-203ENST00000572019 GATA2P23769 480 aaPredicted RBP13.34□□□□□ -0.27
NUP88-203ENST00000572019 GPX4P36969 197 aaPredicted RBP13.34□□□□□ -0.27
NUP88-203ENST00000572019 SMCO1Q147U7 214 aa13.34□□□□□ -0.27
NUP88-203ENST00000572019 MZT2AQ6P582 158 aa13.34□□□□□ -0.27
NUP88-203ENST00000572019 SSX7Q7RTT5 188 aa13.34□□□□□ -0.27
NUP88-203ENST00000572019 TRGV9Q99603 122 aa13.34□□□□□ -0.27
NUP88-203ENST00000572019 SLC25A39Q9BZJ4 359 aaPredicted RBP13.34□□□□□ -0.27
NUP88-203ENST00000572019 ZNF98A6NK75 572 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 GABARAPH6UMI1 98 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 GABARAPO95166 117 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 INSP01308 110 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 SURF2Q15527 256 aaPredicted RBP13.33□□□□□ -0.28
NUP88-203ENST00000572019 CTF1Q16619 201 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 OR51S1Q8NGJ8 323 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 UHRF2Q96PU4 802 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 VCX3AQ9NNX9 186 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 PFDN2Q9UHV9 154 aa13.33□□□□□ -0.28
NUP88-203ENST00000572019 IAPPP10997 89 aa13.32□□□□□ -0.28
NUP88-203ENST00000572019 CCR6P51684 374 aa13.32□□□□□ -0.28
NUP88-203ENST00000572019 CCL18P55774 89 aa13.32□□□□□ -0.28
NUP88-203ENST00000572019 THAP8Q8NA92 274 aa13.32□□□□□ -0.28
NUP88-203ENST00000572019 IL22RA2Q969J5 263 aa13.32□□□□□ -0.28
NUP88-203ENST00000572019 ATP5G1P05496 136 aa13.31□□□□□ -0.28
NUP88-203ENST00000572019 ZNF182P17025 639 aaPredicted RBP13.31□□□□□ -0.28
NUP88-203ENST00000572019 TSPOP30536 169 aa13.31□□□□□ -0.28
NUP88-203ENST00000572019 FUSP35637 526 aaKnown RBP eCLIP13.31□□□□□ -0.28
NUP88-203ENST00000572019 ATP5G3P48201 142 aa13.31□□□□□ -0.28
NUP88-203ENST00000572019 Q9H8V8 135 aa13.31□□□□□ -0.28
NUP88-203ENST00000572019 A0A0B4J2A0 478 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 DISC1C4P0D8 188 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 PRSS46E5RG02 174 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 CTDSP2O14595 271 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 GALR1P47211 349 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 MEOX2P50222 304 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 DLK1P80370 383 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 SMIM4Q8WVI0 70 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 SHPKQ9UHJ6 478 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 FAT1Q14517 4588 aa13.3□□□□□ -0.28
NUP88-203ENST00000572019 CBY3A6NI87 242 aa13.29□□□□□ -0.28
NUP88-203ENST00000572019 PITX3O75364 302 aa13.29□□□□□ -0.28
NUP88-203ENST00000572019 HTN1P15515 57 aa13.29□□□□□ -0.28
NUP88-203ENST00000572019 OR1S1Q8NH92 325 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms