RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 IGKV1D-37A0A075B6S9 117 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 ANKRD34BA5PLL1 514 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 ZNF705EA8MWA4 302 aaPredicted RBP4.95□□□□□ -1.62
VPS53-209ENST00000570771 F8W735 103 aaPredicted RBP4.95□□□□□ -1.62
VPS53-209ENST00000570771 NDUFA4O00483 81 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 RGS13O14921 159 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 YIF1AO95070 293 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 OR2C1O95371 312 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 TRBV12-3P01733 135 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 HSPB1P04792 205 aaKnown RBP4.95□□□□□ -1.62
VPS53-209ENST00000570771 CTSGP08311 255 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 OR5G3P0C626 314 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 PSG1P11464 419 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 BMI1P35226 326 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 CDC34P49427 236 aaPredicted RBP4.95□□□□□ -1.62
VPS53-209ENST00000570771 ELLP55199 621 aaPredicted RBP4.95□□□□□ -1.62
VPS53-209ENST00000570771 LYZP61626 148 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 ZNF90Q03938 601 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 RPEL1Q2QD12 228 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 DEFB136Q30KP8 78 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 C10orf113Q5VZT2 155 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 KLHL30-AS1Q8NEE0 82 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 OR10G4Q8NGN3 311 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 OR10G9Q8NGN4 311 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 OR10G7Q8NGN6 311 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 FAM213BQ8TBF2 198 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 RNF125Q96EQ8 232 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 DUX3Q96PT4 197 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 CITED1Q99966 193 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 DNAJC4Q9NNZ3 241 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 RABAC1Q9UI14 185 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 HIGD1AQ9Y241 93 aa4.95□□□□□ -1.62
VPS53-209ENST00000570771 PRKDCP78527 4128 aaKnown RBP4.95□□□□□ -1.62
VPS53-209ENST00000570771 CTXND1A0A1B0GTU2 59 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 WI2-2373I1.2A0A1W2PRP0 233 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 A0A1W2PRX2 142 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 SEC14L6B5MCN3 397 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 LINC01619G3V211 115 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 I3L521 148 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 IL4P05112 153 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 ORM2P19652 201 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 EDN2P20800 178 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 ADMP35318 185 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 KRTAP21-3Q3LHN1 58 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 KHDC3LQ587J8 217 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 FAM122CQ6P4D5 195 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 NDUFA11Q86Y39 141 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 GPHB5Q86YW7 130 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 STXBP6Q8NFX7 210 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 OR1B1Q8NGR6 318 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 TMEM158Q8WZ71 300 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 GRAMD2BQ96HH9 432 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 OR5B12Q96R08 314 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 METTL26Q96S19 204 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 CHRDL1Q9BU40 450 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 PBDC1Q9BVG4 233 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 TMEM231Q9H6L2 316 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 RPRMQ9NS64 109 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 TECRQ9NZ01 308 aaKnown RBP4.94□□□□□ -1.62
VPS53-209ENST00000570771 UFC1Q9Y3C8 167 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 PUS1Q9Y606 427 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS53-209ENST00000570771 NBEAL1Q6ZS30 2694 aa4.94□□□□□ -1.62
VPS53-209ENST00000570771 WNK1Q9H4A3 2382 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 MGAM2Q2M2H8 2515 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 A0A1W2PS18 150 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 PPP5D1E7EU14 171 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 K7EMT4 169 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 CXorf1O96002 111 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 NPPCP23582 126 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 GATA2P23769 480 aaPredicted RBP4.93□□□□□ -1.62
VPS53-209ENST00000570771 TAGLN2P37802 199 aaKnown RBP4.93□□□□□ -1.62
VPS53-209ENST00000570771 PPT1P50897 306 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 IFITM2Q01629 132 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 CLLU1Q5K131 121 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 FAM74A1Q5RGS3 127 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 FAM78BQ5VT40 261 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 TOMM20LQ6UXN7 152 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 PQLC2Q6ZP29 291 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 LINC00305Q7Z4B0 112 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 C1QL4Q86Z23 238 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 OR1N2Q8NGR9 330 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 RCC1LQ96I51 464 aaKnown RBP4.93□□□□□ -1.62
VPS53-209ENST00000570771 GPR82Q96P67 336 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 ZNF747Q9BV97 191 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 ELOVL1Q9BW60 279 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 DOK5Q9P104 306 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 PEMTQ9UBM1 199 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 FUT9Q9Y231 359 aa4.93□□□□□ -1.62
VPS53-209ENST00000570771 TRAV1-1A0A0B4J248 108 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 IGHV3-35A0A0C4DH35 117 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 ZNF320A2RRD8 509 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 MAP1LC3B2A6NCE7 125 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 M0QZ24 198 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 CCL24O00175 119 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 LGALS9O00182 355 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 OR7C2O60412 319 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 IFNA1P01562 189 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 CD5P06127 495 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 C8orf88P0DMB2 117 aa4.92□□□□□ -1.62
VPS53-209ENST00000570771 RPL7P18124 248 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms