RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 FAM212BQ9NTI7 297 aaPredicted RBP3.99□□□□□ -1.77
VPS53-208ENST00000570650 HMCN2Q8NDA2 5059 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 TRAV26-1A0A087WT03 109 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 A0A0J9YX75 114 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 PLAC8L1A1L4L8 177 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 PTGES3LE9PB15 166 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 F6UB75 175 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 IL4P05112 153 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 FCER2P06734 321 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 M6PRP20645 277 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 NUP62P37198 522 aaPredicted RBP3.98□□□□□ -1.77
VPS53-208ENST00000570650 YPEL3P61236 119 aaPredicted RBP3.98□□□□□ -1.77
VPS53-208ENST00000570650 OR5I1Q13606 314 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 NFE4Q86UQ8 179 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 OR5AP2Q8NGF4 316 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 OR10J6PQ8NGY7 276 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 WDR12Q9GZL7 423 aaKnown RBP3.98□□□□□ -1.77
VPS53-208ENST00000570650 C8orf4Q9NR00 106 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 KLK11Q9UBX7 282 aa3.98□□□□□ -1.77
VPS53-208ENST00000570650 A0A0J9YY99 117 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 A8MTW9 85 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 H3BNG1 76 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 GPR31O00270 319 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 ISLRO14498 428 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 SOCS3O14543 225 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 SIVA1O15304 175 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 OXTP01178 125 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 INSP01308 110 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 IGKV1-39P01597 117 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 IGKV1D-39P04432 117 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 AZU1P20160 251 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 PSMB9P28065 219 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 S100GP29377 79 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 OR10J1P30954 320 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 HSPA13P48723 471 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 RND2P52198 227 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 TIRAPP58753 221 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 DHRS11Q6UWP2 260 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 AMTNQ6UX39 209 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 PACRGLQ8N7B6 248 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 MRGPRFQ96AM1 343 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 GPR146Q96CH1 333 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 MGLLQ99685 303 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 ZNF2Q9BSG1 426 aaPredicted RBP3.97□□□□□ -1.77
VPS53-208ENST00000570650 PDCD10Q9BUL8 212 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 ENY2Q9NPA8 101 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 RPRMQ9NS64 109 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 SCN3BQ9NY72 215 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 EHFQ9NZC4 300 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 DOK5Q9P104 306 aa3.97□□□□□ -1.77
VPS53-208ENST00000570650 TIMM8BQ9Y5J9 83 aaPredicted RBP3.97□□□□□ -1.77
VPS53-208ENST00000570650 TRAV18A0A075B6X5 111 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 IGLV5-52A0A0A0MRZ9 124 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 SMIM30A4D0T7 59 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 ZNF701M0R085 212 aaPredicted RBP3.96□□□□□ -1.78
VPS53-208ENST00000570650 M0R2Z0 102 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 CRXO43186 299 aaPredicted RBP3.96□□□□□ -1.78
VPS53-208ENST00000570650 TOMM40O96008 361 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 P0C879 139 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 RD3LP0DJH9 198 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 SLC25A4P12235 298 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 ETV6P41212 452 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 CBX5P45973 191 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 SUMO2P61956 95 aaKnown RBP3.96□□□□□ -1.78
VPS53-208ENST00000570650 TBCEQ15813 527 aaPredicted RBP3.96□□□□□ -1.78
VPS53-208ENST00000570650 SPINK13Q1W4C9 94 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 IZUMO4Q1ZYL8 232 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 PHLDA2Q53GA4 152 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 SAMD13Q5VXD3 122 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 SFXN4Q6P4A7 337 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 TBC1D26Q86UD7 250 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 OR11H7Q8NGC8 314 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 OR51G1Q8NGK1 321 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 RNF125Q96EQ8 232 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 C16orf74Q96GX8 76 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 FXYD6Q9H0Q3 95 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 RHBDL2Q9NX52 303 aa3.96□□□□□ -1.78
VPS53-208ENST00000570650 RRP15Q9Y3B9 282 aaKnown RBP3.96□□□□□ -1.78
VPS53-208ENST00000570650 A0A0A6YYH2 397 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 A0A0B4J293 547 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 TRDV1A0A1B0GX56 115 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 MEIS3P1A6NDR6 274 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 A6NJ64 397 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 ADAP1O75689 374 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 DUSP14O95147 198 aaKnown RBP3.95□□□□□ -1.78
VPS53-208ENST00000570650 PSG1P11464 419 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 HTR2BP41595 481 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 RFX2P48378 723 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 CNN1P51911 297 aaKnown RBP3.95□□□□□ -1.78
VPS53-208ENST00000570650 TAS2R20P59543 309 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 TAS2R60P59551 318 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 SUPT4H1P63272 117 aaKnown RBP3.95□□□□□ -1.78
VPS53-208ENST00000570650 KLF9Q13886 244 aaPredicted RBP3.95□□□□□ -1.78
VPS53-208ENST00000570650 BSXQ3C1V8 233 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 OR8G2PQ6IF36 304 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 LPCAT3Q6P1A2 487 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 PRSS54Q6PEW0 395 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 TMEM144Q7Z5S9 345 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 GPR141Q7Z602 305 aa3.95□□□□□ -1.78
VPS53-208ENST00000570650 BAP18Q8IXM2 172 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms