RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 GLMPQ8WWB7 406 aa12.51□□□□□ -0.41
CIITA-204ENST00000570546 F2Z2F3 143 aa12.51□□□□□ -0.41
CIITA-204ENST00000570546 LCN12Q6JVE5 192 aa12.51□□□□□ -0.41
CIITA-204ENST00000570546 LYPD2Q6UXB3 125 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 SPACA3Q8IXA5 215 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 C7orf69Q9H7B7 122 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 TNFRSF18Q9Y5U5 241 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 D6R8Y8 96 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 BUB1B-PAK6H3BSN5 160 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 IGHV2-5P01817 119 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 KLRD1Q13241 179 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 ORAOV1Q8WV07 137 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 TMEM14BQ9NUH8 114 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 SIGLEC9Q9Y336 463 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 RPL15P61313 204 aaKnown RBP12.5□□□□□ -0.41
CIITA-204ENST00000570546 ZNF418Q8TF45 676 aaPredicted RBP12.5□□□□□ -0.41
CIITA-204ENST00000570546 COPS9Q8WXC6 57 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 LYZL1Q6UWQ5 148 aa12.5□□□□□ -0.41
CIITA-204ENST00000570546 TPRP12270 2363 aaKnown RBP12.49□□□□□ -0.41
CIITA-204ENST00000570546 Q6ZR03 302 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 ZNRD1Q9P1U0 126 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 TRAV21A0A0B4J279 112 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 IGKCP01834 107 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 VMO1Q7Z5L0 202 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 CACNA1EQ15878 2313 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 TOMM40O96008 361 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 MEIG1Q5JSS6 88 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 HAPLN4Q86UW8 402 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 LINC00479Q96M42 142 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 CACNA1DQ01668 2161 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 ZDBF2Q9HCK1 2354 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 A0A1B0GWB2 263 aa12.49□□□□□ -0.41
CIITA-204ENST00000570546 NHP2Q9NX24 153 aaKnown RBP12.48□□□□□ -0.41
CIITA-204ENST00000570546 PSG3Q16557 428 aa12.48□□□□□ -0.41
CIITA-204ENST00000570546 TEX29Q8N6K0 151 aa12.48□□□□□ -0.41
CIITA-204ENST00000570546 A0A1B0GUS0 222 aa12.48□□□□□ -0.41
CIITA-204ENST00000570546 NCR2O95944 276 aa12.48□□□□□ -0.41
CIITA-204ENST00000570546 VDAC2P45880 294 aaPredicted RBP12.48□□□□□ -0.41
CIITA-204ENST00000570546 Q0VG73 95 aa12.48□□□□□ -0.41
CIITA-204ENST00000570546 DMRTC2Q8IXT2 367 aaPredicted RBP12.48□□□□□ -0.41
CIITA-204ENST00000570546 LYPD6BQ8NI32 183 aa12.48□□□□□ -0.41
CIITA-204ENST00000570546 LRRK1Q38SD2 2015 aa12.48□□□□□ -0.41
CIITA-204ENST00000570546 hDV102S1A0JD36 115 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 DLEU1O43261 78 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 KLF17Q5JT82 389 aaPredicted RBP12.47□□□□□ -0.41
CIITA-204ENST00000570546 POLR3KQ9Y2Y1 108 aaPredicted RBP12.47□□□□□ -0.41
CIITA-204ENST00000570546 TRAV8-1A0A0A6YYK1 113 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 A8MWP6 167 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 SH2D1AO60880 128 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 SIGLEC15Q6ZMC9 328 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 APOMO95445 188 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 CD7P09564 240 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 C15orf32Q32M92 178 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 SAMD13Q5VXD3 122 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 MRPL52Q86TS9 123 aaKnown RBP12.47□□□□□ -0.41
CIITA-204ENST00000570546 CYYR1Q96J86 154 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 DUX3Q96PT4 197 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 PAX8Q06710 450 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 KIAA1671Q9BY89 1806 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 SEC11AP67812 179 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 HSD52Q0P140 79 aa12.47□□□□□ -0.41
CIITA-204ENST00000570546 ORMDL2Q53FV1 153 aa12.46□□□□□ -0.41
CIITA-204ENST00000570546 Q6ZS92 163 aa12.46□□□□□ -0.41
CIITA-204ENST00000570546 Q86TA4 180 aa12.46□□□□□ -0.41
CIITA-204ENST00000570546 APC2O95996 2303 aa12.46□□□□□ -0.41
CIITA-204ENST00000570546 CHTOPQ9Y3Y2 248 aaKnown RBP12.46□□□□□ -0.42
CIITA-204ENST00000570546 COL4A3Q01955 1670 aa12.46□□□□□ -0.42
CIITA-204ENST00000570546 SYS1-DBNDD2H3BUS1 97 aa12.46□□□□□ -0.42
CIITA-204ENST00000570546 EREGO14944 169 aa12.46□□□□□ -0.42
CIITA-204ENST00000570546 IGHV2-70P01814 119 aa12.46□□□□□ -0.42
CIITA-204ENST00000570546 SUMO2P61956 95 aaKnown RBP12.46□□□□□ -0.42
CIITA-204ENST00000570546 C5orf64Q2M2E5 130 aa12.46□□□□□ -0.42
CIITA-204ENST00000570546 A0A1W2PPI3 338 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 TYMSP04818 313 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 LYPD1Q8N2G4 141 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 PSMB11A5LHX3 300 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 C17orf58Q2M2W7 97 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 TDGF1P3P51864 188 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 RPRMLQ8N4K4 120 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 SLC25A2Q9BXI2 301 aa12.45□□□□□ -0.42
CIITA-204ENST00000570546 C15orf65H3BRN8 121 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 OVOL1O14753 267 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 MRAP2Q96G30 205 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 NDUFA4L2Q9NRX3 87 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 RTTNQ86VV8 2226 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 TRAV41A0A0B4J266 112 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 HAX1O00165 279 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 MINOS1Q5TGZ0 78 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 GFRA4Q9GZZ7 299 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 MINOS1-NBL1R4GNA1 71 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 DOCK9Q9BZ29 2069 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 IGKV3OR2-268A0A0C4DH90 116 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 ZNF138P52744 262 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 FXYD7P58549 80 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 LAGE3Q14657 143 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 SSC4DQ8WTU2 575 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 LINC00527Q9UJ94 153 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 OOSP1A8MZH6 123 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 LYPD6Q86Y78 171 aa12.44□□□□□ -0.42
CIITA-204ENST00000570546 OR9G4Q8NGQ1 327 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms