RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LYZL2Q7Z4W2 148 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 C15orf53Q8NAA6 179 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 CSNK1G2-AS1Q8NCQ2 148 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 MISP3Q96FF7 219 aa7.88□□□□□ -1.15
VPS53-207ENST00000570510 NARS2Q96I59 477 aaKnown RBP7.88□□□□□ -1.15
VPS53-207ENST00000570510 APOBP04114 4563 aaKnown RBP7.88□□□□□ -1.15
VPS53-207ENST00000570510 AGRNO00468 2067 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 A0A1W2PS18 150 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 C9orf170A2RU37 121 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 CEBPZOSA8MTT3 80 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 LYRM1O43325 122 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 EIF2B2P49770 351 aaKnown RBP7.87□□□□□ -1.15
VPS53-207ENST00000570510 YPEL3P61236 119 aaPredicted RBP7.87□□□□□ -1.15
VPS53-207ENST00000570510 PPP1R1AQ13522 171 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 Q5VSD8 79 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 MZT2BQ6NZ67 158 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 DTD1Q8TEA8 209 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 MITD1Q8WV92 249 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 GRAMD2BQ96HH9 432 aa7.87□□□□□ -1.15
VPS53-207ENST00000570510 SMIM9A6NGZ8 99 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 TMEM50AO95807 157 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 CFDP00746 253 aaPredicted RBP7.86□□□□□ -1.15
VPS53-207ENST00000570510 APOHP02749 345 aaPredicted RBP7.86□□□□□ -1.15
VPS53-207ENST00000570510 FABP1P07148 127 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 OR4E1P0C645 316 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 NPPCP23582 126 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 BTCP35070 178 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 NUP62P37198 522 aaPredicted RBP7.86□□□□□ -1.15
VPS53-207ENST00000570510 OPRK1P41145 380 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 CCL18P55774 89 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 RAB11AP62491 216 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 ASAH1Q13510 395 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 ZNF846Q147U1 533 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 IZUMO4Q1ZYL8 232 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 FAM222AQ5U5X8 452 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 LILRB2Q8N423 598 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 OR1S2Q8NGQ3 325 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 OR1S1Q8NH92 325 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 VSIRQ9H7M9 311 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 PFDN2Q9UHV9 154 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 RFNGQ9Y644 331 aa7.86□□□□□ -1.15
VPS53-207ENST00000570510 SRRM2Q9UQ35 2752 aaKnown RBP7.85□□□□□ -1.15
VPS53-207ENST00000570510 K7EQG2 157 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 PLA2G10O15496 165 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 S100A7P31151 101 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 TAS2R30P59541 319 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 DAD1P61803 113 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 ID3Q02535 119 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 DHRS2Q13268 280 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 PSMG4Q5JS54 123 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 TOMM20LQ6UXN7 152 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 PINX1Q96BK5 328 aaKnown RBP7.85□□□□□ -1.15
VPS53-207ENST00000570510 RAB40CQ96S21 281 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 DKK2Q9UBU2 259 aa7.85□□□□□ -1.15
VPS53-207ENST00000570510 FNDC10F2Z333 226 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 SYNGR2O43760 224 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 NUDT3O95989 172 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 IGHV3-48P01763 117 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 TCRBP04435 133 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 KRTAP10-2P60368 255 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 SNRPD3P62318 126 aaKnown RBP7.84□□□□□ -1.15
VPS53-207ENST00000570510 C4orf46Q504U0 113 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 METTL26Q96S19 204 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 NEU1Q99519 415 aa7.84□□□□□ -1.15
VPS53-207ENST00000570510 FNDC4Q9H6D8 234 aaPredicted RBP7.84□□□□□ -1.15
VPS53-207ENST00000570510 SEPSECSQ9HD40 501 aaKnown RBP7.84□□□□□ -1.15
VPS53-207ENST00000570510 PUS1Q9Y606 427 aaKnown RBP eCLIP7.84□□□□□ -1.15
VPS53-207ENST00000570510 DNAH5Q8TE73 4624 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 HELTA6NFD8 242 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 IL5P05113 134 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 IGLC1P0CG04 106 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 CRYBB3P26998 211 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 AP2S1P53680 142 aaPredicted RBP7.83□□□□□ -1.16
VPS53-207ENST00000570510 DLK1P80370 383 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 CLINT1Q14677 625 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 GGNBP1Q5YKI7 109 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 PRSS54Q6PEW0 395 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 LYPD1Q8N2G4 141 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 ZNRF2Q8NHG8 242 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 Q8WTZ3 238 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 C20orf85Q9H1P6 137 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 RBKSQ9H477 322 aa7.83□□□□□ -1.16
VPS53-207ENST00000570510 FAM240BA0A1B0GVZ2 78 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 PRAF2O60831 178 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 UPK1BO75841 260 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 IGKV1-17P01599 117 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 NKX2-1P43699 371 aaPredicted RBP7.82□□□□□ -1.16
VPS53-207ENST00000570510 P2RY1P47900 373 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 DEFA1P59665 94 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 DEFA3P59666 94 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 OXA1LQ15070 435 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 SPINK9Q5DT21 86 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 TTC32Q5I0X7 151 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 OR8G2PQ6IF36 304 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 OR4D5Q8NGN0 318 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 ZFAND3Q9H8U3 227 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 SLC45A2Q9UMX9 530 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 RNF24Q9Y225 148 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 NACAE9PAV3 2078 aa7.82□□□□□ -1.16
VPS53-207ENST00000570510 FAM229AH3BQW9 127 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms