RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 DLEU1O43261 78 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 OR2J3O76001 311 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 SRP14P37108 136 aaKnown RBP7.87□□□□□ -1.15
VPS53-206ENST00000570359 Q56UQ5 140 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 COA6Q5JTJ3 125 aaKnown RBP7.87□□□□□ -1.15
VPS53-206ENST00000570359 EXOC3-AS1Q8N2X6 119 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 FXYD5Q96DB9 178 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 PERPQ96FX8 193 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 MRPL32Q9BYC8 188 aaKnown RBP7.87□□□□□ -1.15
VPS53-206ENST00000570359 GOLT1BQ9Y3E0 138 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 ZANQ9Y493 2812 aa7.87□□□□□ -1.15
VPS53-206ENST00000570359 A1L4Q6 167 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 A6NNC1 897 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 ZNF705GA8MUZ8 300 aaPredicted RBP7.86□□□□□ -1.15
VPS53-206ENST00000570359 IL4P05112 153 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 SAA4P35542 130 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 EFNA4P52798 201 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 C5orf64Q2M2E5 130 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 TMEM249Q2WGJ8 235 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 ZNF329Q86UD4 541 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 THAP8Q8NA92 274 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 OR11H6Q8NGC7 330 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 OR1L6Q8NGR2 347 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 FAM168AQ92567 244 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 SOX21Q9Y651 276 aaPredicted RBP7.86□□□□□ -1.15
VPS53-206ENST00000570359 OR2T8A6NH00 312 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 PEX7O00628 323 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 ADMP35318 185 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 CNN1P51911 297 aaKnown RBP7.86□□□□□ -1.15
VPS53-206ENST00000570359 ATP5IP56385 69 aaPredicted RBP7.86□□□□□ -1.15
VPS53-206ENST00000570359 UBE2G1P62253 170 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 SELENOTP62341 195 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 RPEL1Q2QD12 228 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 IBA57Q5T440 356 aaKnown RBP7.86□□□□□ -1.15
VPS53-206ENST00000570359 ARPC1AQ92747 370 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 C17orf77Q96MU5 243 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 TMUB1Q9BVT8 246 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 SNHG12Q9BXW3 62 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 HIGD1AQ9Y241 93 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 PTPN13Q12923 2485 aa7.86□□□□□ -1.15
VPS53-206ENST00000570359 ANKRD17O75179 2603 aaKnown RBP7.86□□□□□ -1.15
VPS53-206ENST00000570359 DOPEY2Q9Y3R5 2298 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 M0R1W7 72 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 CORTO00230 105 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 GNG7O60262 68 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 IGHV4-39P01824 125 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 NBEAP1P0C6P0 100 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 IGLC1P0CG04 106 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 C21orf62-AS1Q17RA5 79 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 BAGE2Q86Y30 109 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 MS4A10Q96PG2 267 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 TXNDC17Q9BRA2 123 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 IGHV3OR16-13A0A075B7E8 117 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 IGHV3-74A0A0B4J1X5 117 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 SNURFLB1AK76 121 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 I3L2K1 104 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 K7EIM0 57 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 TMEM256Q8N2U0 113 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 C11orf52Q96A22 123 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 HSPB9Q9BQS6 159 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 TLN2Q9Y4G6 2542 aa7.85□□□□□ -1.15
VPS53-206ENST00000570359 A0A1W2PRE2 83 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 ODF3BA8MYP8 253 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 ZNF25P17030 456 aaPredicted RBP7.84□□□□□ -1.15
VPS53-206ENST00000570359 G0S2P27469 103 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 FCGR2BP31994 310 aaPredicted RBP7.84□□□□□ -1.15
VPS53-206ENST00000570359 ACTL10Q5JWF8 245 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 CYB5R2Q6BCY4 276 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 TMEM116Q8NCL8 245 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 TBX15Q96SF7 602 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 TRGV9Q99603 122 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 CCL19Q99731 98 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 TMEM208Q9BTX3 173 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 GNB4Q9HAV0 340 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 IL36BQ9NZH7 164 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 IGHV3-66A0A0C4DH42 116 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 LINC01548A6NM66 108 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 INS-IGF2F8WCM5 200 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 IGKV1-17P01599 117 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 CD33P20138 364 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 PYGO2Q9BRQ0 406 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 C19orf24Q9BVV8 132 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 SLC25A39Q9BZJ4 359 aaPredicted RBP7.84□□□□□ -1.15
VPS53-206ENST00000570359 Q9H3A6 140 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 V9GYV3 84 aa7.84□□□□□ -1.15
VPS53-206ENST00000570359 IGHV3-49A0A0A0MS15 119 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 IGHV2-70DA0A0C4DH43 119 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 F2Z2F3 143 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 AMBPP02760 352 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 CRYGCP07315 174 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 LY6EQ16553 131 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 IGFL4Q6B9Z1 124 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 MAPK1IP1LQ8NDC0 245 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 RNF2Q99496 336 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 MRPL18Q9H0U6 180 aaKnown RBP7.83□□□□□ -1.16
VPS53-206ENST00000570359 SELENOKQ9Y6D0 94 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 TRAV40A0A0B4J280 105 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 G3V318 75 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 NDUFB8O95169 186 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 FSTL3O95633 263 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms