RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 FDCSPQ8NFU4 85 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 SPOCK3Q9BQ16 436 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 IL4P05112 153 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 SCGB1C2P0DMR2 95 aa9.3□□□□□ -0.92
CLN3-238ENST00000569430 DAZAP2Q15038 168 aaPredicted RBP9.3□□□□□ -0.92
CLN3-238ENST00000569430 TANC2Q9HCD6 1990 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 KMT2EQ8IZD2 1858 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 SMIM13P0DJ93 91 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 RNASE2P10153 161 aaKnown RBP9.29□□□□□ -0.92
CLN3-238ENST00000569430 SMAGPQ0VAQ4 97 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 KRTAP27-1Q3LI81 207 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 C2orf83Q53S99 150 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 DUX4L9Q6RFH8 374 aaPredicted RBP9.29□□□□□ -0.92
CLN3-238ENST00000569430 FAM90A1Q86YD7 464 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 CHCHD1Q96BP2 118 aaKnown RBP9.29□□□□□ -0.92
CLN3-238ENST00000569430 TMEM160Q9NX00 188 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 NAV3Q8IVL0 2385 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 IGHV1-18A0A0C4DH31 117 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 GLRXP35754 106 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 FBXL15Q9H469 300 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 JKAMPQ9P055 326 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 DYSFO75923 2080 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 DMXL2Q8TDJ6 3036 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 SMIM27A0A1W2PRY6 76 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 MC5RP33032 325 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 SFTA2Q6UW10 78 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 ATP5L2Q7Z4Y8 100 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 FMC1Q96HJ9 113 aa9.29□□□□□ -0.92
CLN3-238ENST00000569430 HCFC1P51610 2035 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 DMXL1Q9Y485 3027 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 FAM231BA6NCW3 169 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 CD40P25942 277 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 BRWD1-AS2P59051 145 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 PRR20EP86478 221 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 PRR20CP86479 221 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 PRR20DP86480 221 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 PRR20BP86481 221 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 PRR20AP86496 221 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 FAM27E3Q08E93 113 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 SRSF9Q13242 221 aaKnown RBP eCLIP9.28□□□□□ -0.92
CLN3-238ENST00000569430 ZNF329Q86UD4 541 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 TMEM14BQ9NUH8 114 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 NHP2Q9NX24 153 aaKnown RBP9.28□□□□□ -0.92
CLN3-238ENST00000569430 IGHV3OR16-13A0A075B7E8 117 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 IGHV3-74A0A0B4J1X5 117 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 LOC107984156A0A0G2JMH3 177 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 IGLC7A0M8Q6 106 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 ARL17AQ8IVW1 177 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 NEUROG1Q92886 237 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 HIST1H4GQ99525 98 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 ZNF257Q9Y2Q1 563 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 A0A0G2JLM5 398 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 C15orf65H3BRN8 121 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 MORN5Q5VZ52 161 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 MYOZ3Q8TDC0 251 aa9.28□□□□□ -0.92
CLN3-238ENST00000569430 SOX21Q9Y651 276 aaPredicted RBP9.28□□□□□ -0.92
CLN3-238ENST00000569430 IGHV1-24A0A0C4DH33 117 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 CD5LO43866 347 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 CIDEAO60543 219 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 RASL11AQ6T310 242 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 GP6Q9HCN6 339 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 RPUSD1Q9UJJ7 312 aaKnown RBP9.27□□□□□ -0.93
CLN3-238ENST00000569430 NCR2O95944 276 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 TCRAP04437 139 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 TEX45Q8NA69 505 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 KIAA1549Q9HCM3 1950 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 SPG11Q96JI7 2443 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 IGHV2-70DA0A0C4DH43 119 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 TMEM249Q2WGJ8 235 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 BVES-AS1Q5T3Y7 98 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 SAMD13Q5VXD3 122 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 ORMDL3Q8N138 153 aa9.27□□□□□ -0.93
CLN3-238ENST00000569430 SRRM4A7MD48 611 aaKnown RBP9.26□□□□□ -0.93
CLN3-238ENST00000569430 MMP23AO75900 390 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 NDUFB8O95169 186 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 PPIFP30405 207 aaKnown RBP9.26□□□□□ -0.93
CLN3-238ENST00000569430 CDKN1BP46527 198 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 SEC11AP67812 179 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 TMEM186Q96B77 213 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 GTSF1LQ9H1H1 148 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 MS4A6AQ9H2W1 248 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 MAP1LC3AQ9H492 121 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 IGKV3-7A0A075B6H7 116 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 ARMS2P0C7Q2 107 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 Q8TCH9 128 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 D6R8Y8 96 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 H3BVH4 76 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 IGHV3-23P01764 117 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 SSBP2P81877 361 aaPredicted RBP9.26□□□□□ -0.93
CLN3-238ENST00000569430 KIR3DS1Q14943 382 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 PRSS57Q6UWY2 283 aa9.26□□□□□ -0.93
CLN3-238ENST00000569430 SS18L1O75177 396 aaPredicted RBP9.25□□□□□ -0.93
CLN3-238ENST00000569430 IFI27P40305 119 aaPredicted RBP9.25□□□□□ -0.93
CLN3-238ENST00000569430 C11orf53Q8IXP5 236 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 DEFB124Q8NES8 71 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 FOXC2Q99958 501 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 SLC25A2Q9BXI2 301 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 M0R3E3 92 aa9.25□□□□□ -0.93
CLN3-238ENST00000569430 TRIP6Q15654 476 aaKnown RBP9.25□□□□□ -0.93
CLN3-238ENST00000569430 ZNF502Q8TBZ5 544 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms