RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RNF125Q96EQ8 232 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 RAB40CQ96S21 281 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 MS4A6AQ9H2W1 248 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 U3KQE9 123 aa10.28□□□□□ -0.76
CLN3-235ENST00000568497 DEDDO75618 318 aa10.27□□□□□ -0.77
CLN3-235ENST00000568497 SNRPCP09234 159 aaKnown RBP10.27□□□□□ -0.77
CLN3-235ENST00000568497 ORM2P19652 201 aa10.27□□□□□ -0.77
CLN3-235ENST00000568497 PMS2P11Q13670 270 aa10.27□□□□□ -0.77
CLN3-235ENST00000568497 FCN2Q15485 313 aa10.27□□□□□ -0.77
CLN3-235ENST00000568497 LAMTOR1Q6IAA8 161 aa10.27□□□□□ -0.77
CLN3-235ENST00000568497 TRGV9Q99603 122 aa10.27□□□□□ -0.77
CLN3-235ENST00000568497 CXorf65A6NEN9 183 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 PRAF2O60831 178 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 TSC22D2O75157 780 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 NHLH2Q02577 135 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 C16orf54Q6UWD8 224 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 CYP2G1PQ6ZSU1 146 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 OR1B1Q8NGR6 318 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 GLMPQ8WWB7 406 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 SPAG8Q99932 426 aaPredicted RBP10.26□□□□□ -0.77
CLN3-235ENST00000568497 MAP6D1Q9H9H5 199 aa10.26□□□□□ -0.77
CLN3-235ENST00000568497 TRAV25A0A0B4J276 109 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 KNCNA6PVL3 124 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 DNASE2O00115 360 aaPredicted RBP10.25□□□□□ -0.77
CLN3-235ENST00000568497 ZNF688P0C7X2 276 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 ATP5IP56385 69 aaPredicted RBP10.25□□□□□ -0.77
CLN3-235ENST00000568497 DEFB131AP59861 70 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 DLK1P80370 383 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 TMEM252Q8N6L7 170 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 BPIFCQ8NFQ6 507 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 OR11H7Q8NGC8 314 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 OR10P1Q8NGE3 313 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 PPP1R14BQ96C90 147 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 MGST2Q99735 147 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 RNF126Q9BV68 326 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 SCRT1Q9BWW7 348 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 SLC25A22Q9H936 323 aa10.25□□□□□ -0.77
CLN3-235ENST00000568497 UBE2L5PA0A1B0GUS4 154 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 SCGB2A1O75556 95 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 PTTG1O95997 202 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 Q5BKY6 102 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 IGFL4Q6B9Z1 124 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 LINC00322Q6ZN03 302 aaPredicted RBP10.24□□□□□ -0.77
CLN3-235ENST00000568497 TMEM144Q7Z5S9 345 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 PPP1R1CQ8WVI7 109 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 UHRF2Q96PU4 802 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 SMIM3Q9BZL3 60 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 RFNGQ9Y644 331 aa10.24□□□□□ -0.77
CLN3-235ENST00000568497 OR4C46A6NHA9 309 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 BUB3O43684 328 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 LINC00869P0C866 280 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 EIF2B2P49770 351 aaKnown RBP10.23□□□□□ -0.77
CLN3-235ENST00000568497 TAS2R30P59541 319 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 CLINT1Q14677 625 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 MIC13Q5XKP0 118 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 C17orf77Q96MU5 243 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 SLC25A32Q9H2D1 315 aa10.23□□□□□ -0.77
CLN3-235ENST00000568497 LYRM2Q9NU23 88 aaPredicted RBP10.23□□□□□ -0.77
CLN3-235ENST00000568497 NUPR2A6NF83 97 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 H3BTX0 84 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 K7EQG2 157 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 EIF3GO75821 320 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLN3-235ENST00000568497 OR5G3P0C626 314 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 EWSR1Q01844 656 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLN3-235ENST00000568497 MORN5Q5VZ52 161 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 PATE2Q6UY27 113 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 SIGLEC15Q6ZMC9 328 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 NMES1Q9C002 83 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 ARL6Q9H0F7 186 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 MBD2Q9UBB5 411 aa10.22□□□□□ -0.77
CLN3-235ENST00000568497 MUC4Q99102 2169 aa10.21□□□□□ -0.77
CLN3-235ENST00000568497 A0A1W2PS18 150 aa10.21□□□□□ -0.77
CLN3-235ENST00000568497 AGPAT2O15120 278 aa10.21□□□□□ -0.77
CLN3-235ENST00000568497 PVALBP20472 110 aaPredicted RBP10.21□□□□□ -0.77
CLN3-235ENST00000568497 THAP6Q8TBB0 222 aa10.21□□□□□ -0.77
CLN3-235ENST00000568497 DCANP1Q8TF63 244 aa10.21□□□□□ -0.77
CLN3-235ENST00000568497 NARS2Q96I59 477 aaKnown RBP10.21□□□□□ -0.77
CLN3-235ENST00000568497 TMEM231Q9H6L2 316 aa10.21□□□□□ -0.77
CLN3-235ENST00000568497 SLC45A2Q9UMX9 530 aa10.21□□□□□ -0.77
CLN3-235ENST00000568497 TRAV5A0A0B4J249 113 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 ZNF98A6NK75 572 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 SMLR1H3BR10 107 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 MPC2O95563 127 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 FGF7P21781 194 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 HLA-DMBP28068 263 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 SULT1A1P50225 295 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 BAXQ07812 192 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 RGS21Q2M5E4 152 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 GCSAMLQ5JQS6 135 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 PSMG4Q5JS54 123 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 GRAMD2BQ96HH9 432 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 C20orf173Q96LM9 149 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 TMEM147Q9BVK8 224 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 GGTLC1Q9BX51 225 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 MED28Q9H204 178 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 WFDC1Q9HC57 220 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 NPVFQ9HCQ7 196 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 UQCC1Q9NVA1 299 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 ABCA13Q86UQ4 5058 aa10.2□□□□□ -0.78
CLN3-235ENST00000568497 LOC102724200A0A096LPH7 203 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms