RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	RFNG	Q9Y644	331 aa		12.07	□□□□□ -0.48
CLN3-231	ENST00000568422	MED6	O75586	246 aa		12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	IGKV3-20	P01619	116 aa		12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	MEOX2	P50222	304 aa		12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	PAX9	P55771	341 aa		12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	LYZ	P61626	148 aa		12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	RPP30	P78346	268 aa	Known RBP	12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	EBLN2	Q6P2I7	272 aa		12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	ZNF709	Q8N972	641 aa		12.06	□□□□□ -0.48
CLN3-231	ENST00000568422	TNFSF8	P32971	234 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	AP3S2	P59780	193 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	PSG9	Q00887	426 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	ZNF79	Q15937	498 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	GGNBP1	Q5YKI7	109 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	LRTM2	Q8N967	370 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	THAP8	Q8NA92	274 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	OR4B1	Q8NGF8	309 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	CIB3	Q96Q77	187 aa	Predicted RBP	12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	SLIRP	Q9GZT3	109 aa	Known RBP	12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	RPRM	Q9NS64	109 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	SLC45A2	Q9UMX9	530 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	GOLT1B	Q9Y3E0	138 aa		12.05	□□□□□ -0.48
CLN3-231	ENST00000568422	PCLO	Q9Y6V0	5065 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	IGHV3OR16-12	A0A075B7B8	117 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	NOL3	O60936	208 aa	Known RBP	12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	S100A7	P31151	101 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	EMP1	P54849	157 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	FXYD7	P58549	80 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	OXA1L	Q15070	435 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	TMED4	Q7Z7H5	227 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	DEDD2	Q8WXF8	326 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	NIPSNAP3B	Q9BS92	247 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	DKK2	Q9UBU2	259 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	KIAA1109	Q2LD37	5005 aa		12.04	□□□□□ -0.48
CLN3-231	ENST00000568422	IGKV1OR2-108	A0A075B7D4	117 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	IFNA21	P01568	189 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	GALR1	P47211	349 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	DEFB1	P60022	68 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	OR2F1	Q13607	317 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	FAM78B	Q5VT40	261 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	OR4D5	Q8NGN0	318 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	SLC25A21	Q9BQT8	299 aa	Predicted RBP	12.03	□□□□□ -0.48
CLN3-231	ENST00000568422	TMED3	Q9Y3Q3	217 aa		12.03	□□□□□ -0.48
CLN3-231	ENST00000568422		A0A0J9YX75	114 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	HBE1	P02100	147 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	IAPP	P10997	89 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	VAMP1	P23763	118 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	LGALS9B	Q3B8N2	356 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	FAM222A	Q5U5X8	452 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	TOMM5	Q8N4H5	51 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	MCFD2	Q8NI22	146 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	C16orf92	Q96LL3	132 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	C7orf50	Q9BRJ6	194 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	SCRT1	Q9BWW7	348 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	SLC35B3	Q9H1N7	401 aa		12.02	□□□□□ -0.49
CLN3-231	ENST00000568422	PAIP2B	Q9ULR5	123 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-231	ENST00000568422		A0A1B0GVY2	172 aa		12.01	□□□□□ -0.49
CLN3-231	ENST00000568422		H3BMQ9	156 aa		12.01	□□□□□ -0.49
CLN3-231	ENST00000568422	SYNGR2	O43760	224 aa		12.01	□□□□□ -0.49
CLN3-231	ENST00000568422	BPIFC	Q8NFQ6	507 aa		12.01	□□□□□ -0.49
CLN3-231	ENST00000568422	TRIM63	Q969Q1	353 aa		12.01	□□□□□ -0.49
CLN3-231	ENST00000568422	GPR82	Q96P67	336 aa		12.01	□□□□□ -0.49
CLN3-231	ENST00000568422	DOK5	Q9P104	306 aa		12.01	□□□□□ -0.49
CLN3-231	ENST00000568422	LOC102723971	A0A1B0GUV8	181 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422	ZNF98	A6NK75	572 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422		A8MTW9	85 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422	RRN3P1	Q2M238	152 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422	PYDC2	Q56P42	97 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422	C1orf158	Q8N1D5	194 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422	OR1B1	Q8NGR6	318 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422	FAT2	Q9NYQ8	4349 aa		12	□□□□□ -0.49
CLN3-231	ENST00000568422	PRSS29P	A6NIE9	313 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	PRSS46	E5RG02	174 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422		F6UB75	175 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	SFT2D2	O95562	160 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	RNF212	Q495C1	297 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	UBE2DNL	Q8IWF7	75 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	IGF2BP2-AS1	Q96M15	143 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	RSG1	Q9BU20	258 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	MAGT1	Q9H0U3	335 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	SLC25A32	Q9H2D1	315 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	SLC25A22	Q9H936	323 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	YTHDF2	Q9Y5A9	579 aa	Known RBP	11.99	□□□□□ -0.49
CLN3-231	ENST00000568422	DNAH2	Q9P225	4427 aa		11.99	□□□□□ -0.49
CLN3-231	ENST00000568422		M0R2N4	97 aa		11.98	□□□□□ -0.49
CLN3-231	ENST00000568422	WRB	O00258	174 aa		11.98	□□□□□ -0.49
CLN3-231	ENST00000568422	RTL8C	O15255	209 aa		11.98	□□□□□ -0.49
CLN3-231	ENST00000568422	C20orf173	Q96LM9	149 aa		11.98	□□□□□ -0.49
CLN3-231	ENST00000568422	TMEM147	Q9BVK8	224 aa		11.98	□□□□□ -0.49
CLN3-231	ENST00000568422	DUSP14	O95147	198 aa	Known RBP	11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	ORM2	P19652	201 aa		11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	UBE2M	P61081	183 aa	Known RBP	11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	B2M	P61769	119 aa		11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	AKR1C1	Q04828	323 aa		11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	PPP1R1A	Q13522	171 aa		11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	SPANXN5	Q5MJ07	72 aa		11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	AMTN	Q6UX39	209 aa		11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	TMEM208	Q9BTX3	173 aa		11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	STRAP	Q9Y3F4	350 aa	Known RBP	11.97	□□□□□ -0.49
CLN3-231	ENST00000568422	PKHD1	P08F94	4074 aa		11.96	□□□□□ -0.49

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