RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 OR1B1Q8NGR6 318 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 HSPB11Q9Y547 144 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 FRMD6-AS1P0C7T7 363 aa14.57□□□□□ -0.08
CLN3-225ENST00000566824 PET100P0DJ07 73 aa14.57□□□□□ -0.08
CLN3-225ENST00000566824 BMI1P35226 326 aa14.57□□□□□ -0.08
CLN3-225ENST00000566824 RPL11P62913 178 aaKnown RBP14.57□□□□□ -0.08
CLN3-225ENST00000566824 ATP6V1FQ16864 119 aa14.57□□□□□ -0.08
CLN3-225ENST00000566824 NARS2Q96I59 477 aaKnown RBP14.57□□□□□ -0.08
CLN3-225ENST00000566824 CITED4Q96RK1 184 aa14.57□□□□□ -0.08
CLN3-225ENST00000566824 GGTLC1Q9BX51 225 aa14.57□□□□□ -0.08
CLN3-225ENST00000566824 TMEM231Q9H6L2 316 aa14.57□□□□□ -0.08
CLN3-225ENST00000566824 OR11H12B2RN74 326 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 CAMLGP49069 296 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 SELENOTP62341 195 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 MIC13Q5XKP0 118 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 LEMD1Q68G75 181 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 THAP6Q8TBB0 222 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 GRAMD2BQ96HH9 432 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 ASCL2Q99929 193 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 SMIM3Q9BZL3 60 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 WFDC1Q9HC57 220 aa14.56□□□□□ -0.08
CLN3-225ENST00000566824 OR4C46A6NHA9 309 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 SMLR1H3BR10 107 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 CFDP00746 253 aaPredicted RBP14.55□□□□□ -0.08
CLN3-225ENST00000566824 FGF7P21781 194 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 PLP1P60201 277 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 RAP2BP61225 183 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 BAXQ07812 192 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 ZNF124Q15973 351 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 STXBP6Q8NFX7 210 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 UHRF2Q96PU4 802 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 SCRT1Q9BWW7 348 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 ARL6Q9H0F7 186 aa14.55□□□□□ -0.08
CLN3-225ENST00000566824 PRR20EP86478 221 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 PRR20CP86479 221 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 PRR20DP86480 221 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 PRR20BP86481 221 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 PRR20AP86496 221 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 ZNF546Q86UE3 836 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 PPP1R14BQ96C90 147 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 C17orf77Q96MU5 243 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 B9D2Q9BPU9 175 aa14.54□□□□□ -0.08
CLN3-225ENST00000566824 TENM3Q9P273 2699 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 RBMY1BA6NDE4 496 aaKnown RBP14.53□□□□□ -0.08
CLN3-225ENST00000566824 RBMY1EA6NEQ0 496 aaKnown RBP14.53□□□□□ -0.08
CLN3-225ENST00000566824 ZNF98A6NK75 572 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 K7EQG2 157 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 HYPMO75409 117 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 OR5G3P0C626 314 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 RBMY1DP0C7P1 496 aaKnown RBP14.53□□□□□ -0.08
CLN3-225ENST00000566824 OPCMLQ14982 345 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 SIGLEC15Q6ZMC9 328 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 Q6ZNX1 250 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 SBSPONQ8IVN8 264 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 OR2T35Q8NGX2 323 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 DCANP1Q8TF63 244 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 SLC25A32Q9H2D1 315 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 SRD5A3Q9H8P0 318 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 SLC25A22Q9H936 323 aa14.53□□□□□ -0.08
CLN3-225ENST00000566824 A8MZ25 164 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 H3BRN7 92 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 DNASE2O00115 360 aaPredicted RBP14.52□□□□□ -0.08
CLN3-225ENST00000566824 CD5P06127 495 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 MORN5Q5VZ52 161 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 APRG1Q8IVJ8 170 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 ASB13Q8WXK3 278 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 TMEM37Q8WXS4 190 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 ATP5SQ99766 215 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 SHANK2-AS3Q9BTD1 123 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 SLC25A39Q9BZJ4 359 aaPredicted RBP14.52□□□□□ -0.08
CLN3-225ENST00000566824 MAP6D1Q9H9H5 199 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 HIGD1AQ9Y241 93 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 RFNGQ9Y644 331 aa14.52□□□□□ -0.08
CLN3-225ENST00000566824 AGRNO00468 2067 aa14.52□□□□□ -0.09
CLN3-225ENST00000566824 HELTA6NFD8 242 aa14.51□□□□□ -0.09
CLN3-225ENST00000566824 LINC00322Q6ZN03 302 aaPredicted RBP14.51□□□□□ -0.09
CLN3-225ENST00000566824 NPCDR1Q9BY65 106 aa14.51□□□□□ -0.09
CLN3-225ENST00000566824 WDR61Q9GZS3 305 aaKnown RBP14.51□□□□□ -0.09
CLN3-225ENST00000566824 ARV1Q9H2C2 271 aa14.51□□□□□ -0.09
CLN3-225ENST00000566824 TUBA4BQ9H853 241 aa14.51□□□□□ -0.09
CLN3-225ENST00000566824 NBEAL2Q6ZNJ1 2754 aa14.51□□□□□ -0.09
CLN3-225ENST00000566824 RPL29P47914 159 aaKnown RBP14.5□□□□□ -0.09
CLN3-225ENST00000566824 PAFAH1B2P68402 229 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 FGL1Q08830 312 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 RAB31Q13636 194 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 GCSAMLQ5JQS6 135 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 C1orf194Q5T5A4 169 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 OR8I2Q8N0Y5 310 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 SLC39A9Q9NUM3 307 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 FBXL17Q9UF56 701 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 PXMP4Q9Y6I8 212 aa14.5□□□□□ -0.09
CLN3-225ENST00000566824 HUWE1Q7Z6Z7 4374 aaKnown RBP14.5□□□□□ -0.09
CLN3-225ENST00000566824 FXYD6-FXYD2A0A087WZ82 144 aa14.49□□□□□ -0.09
CLN3-225ENST00000566824 TRAV2A0A0B4J234 112 aa14.49□□□□□ -0.09
CLN3-225ENST00000566824 RNF222A6NCQ9 220 aa14.49□□□□□ -0.09
CLN3-225ENST00000566824 ZNF688P0C7X2 276 aa14.49□□□□□ -0.09
CLN3-225ENST00000566824 NUP62P37198 522 aaPredicted RBP14.49□□□□□ -0.09
CLN3-225ENST00000566824 AQP10Q96PS8 301 aa14.49□□□□□ -0.09
CLN3-225ENST00000566824 NRN1Q9NPD7 142 aa14.49□□□□□ -0.09
CLN3-225ENST00000566824 PFDN2Q9UHV9 154 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms