RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 MRPL27Q9P0M9 148 aaKnown RBP23.55■■□□□ 1.36
CTCF-203ENST00000566078 IGHV3OR16-8A0A075B7F1 116 aa23.55■■□□□ 1.36
CTCF-203ENST00000566078 HAX1O00165 279 aa23.55■■□□□ 1.36
CTCF-203ENST00000566078 ARL14EPLP0DKL9 152 aa23.55■■□□□ 1.36
CTCF-203ENST00000566078 TECRQ9NZ01 308 aaKnown RBP23.55■■□□□ 1.36
CTCF-203ENST00000566078 C2CD3Q4AC94 2353 aa23.55■■□□□ 1.36
CTCF-203ENST00000566078 CLPSL1A2RUU4 121 aa23.54■■□□□ 1.36
CTCF-203ENST00000566078 TAS2R45P59539 299 aa23.54■■□□□ 1.36
CTCF-203ENST00000566078 IQCF2Q8IXL9 164 aa23.54■■□□□ 1.36
CTCF-203ENST00000566078 SETD2Q9BYW2 2564 aaPredicted RBP23.54■■□□□ 1.36
CTCF-203ENST00000566078 TRAV5A0A0B4J249 113 aa23.53■■□□□ 1.36
CTCF-203ENST00000566078 GGCTO75223 188 aaKnown RBP23.53■■□□□ 1.36
CTCF-203ENST00000566078 C8orf88P0DMB2 117 aa23.53■■□□□ 1.36
CTCF-203ENST00000566078 KHDC3LQ587J8 217 aa23.53■■□□□ 1.36
CTCF-203ENST00000566078 MARC2Q969Z3 335 aa23.53■■□□□ 1.36
CTCF-203ENST00000566078 SLC25A39Q9BZJ4 359 aaPredicted RBP23.53■■□□□ 1.36
CTCF-203ENST00000566078 TMPRSS5Q9H3S3 457 aa23.53■■□□□ 1.36
CTCF-203ENST00000566078 NUDT19A8MXV4 375 aa23.52■■□□□ 1.36
CTCF-203ENST00000566078 CXorf1O96002 111 aa23.52■■□□□ 1.36
CTCF-203ENST00000566078 SLC25A2Q9BXI2 301 aa23.52■■□□□ 1.36
CTCF-203ENST00000566078 RABAC1Q9UI14 185 aa23.51■■□□□ 1.35
CTCF-203ENST00000566078 CD28P10747 220 aa23.51■■□□□ 1.35
CTCF-203ENST00000566078 CDX1P47902 265 aaPredicted RBP23.51■■□□□ 1.35
CTCF-203ENST00000566078 PROK1P58294 105 aa23.51■■□□□ 1.35
CTCF-203ENST00000566078 C18orf65Q6ZTR6 163 aa23.51■■□□□ 1.35
CTCF-203ENST00000566078 SCRT1Q9BWW7 348 aa23.51■■□□□ 1.35
CTCF-203ENST00000566078 H3BRN7 92 aa23.5■■□□□ 1.35
CTCF-203ENST00000566078 NDUFA4O00483 81 aa23.5■■□□□ 1.35
CTCF-203ENST00000566078 OR7C2O60412 319 aa23.5■■□□□ 1.35
CTCF-203ENST00000566078 HIST2H2BDQ6DRA6 164 aa23.5■■□□□ 1.35
CTCF-203ENST00000566078 C11orf44Q8N8P7 122 aa23.5■■□□□ 1.35
CTCF-203ENST00000566078 FAM167A-AS1Q96KT0 104 aa23.5■■□□□ 1.35
CTCF-203ENST00000566078 I3L521 148 aa23.49■■□□□ 1.35
CTCF-203ENST00000566078 LEMD1Q68G75 181 aa23.49■■□□□ 1.35
CTCF-203ENST00000566078 SHANK2-AS3Q9BTD1 123 aa23.49■■□□□ 1.35
CTCF-203ENST00000566078 GNG13Q9P2W3 67 aa23.49■■□□□ 1.35
CTCF-203ENST00000566078 PQLC2Q6ZP29 291 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 S100A7AQ86SG5 101 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 C4orf3Q8WVX3 66 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 C20orf24Q9BUV8 137 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 RAB19A4D1S5 217 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 GCHFRP30047 84 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 ZNF503Q96F45 646 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 FAM210AQ96ND0 272 aa23.48■■□□□ 1.35
CTCF-203ENST00000566078 IGHV4OR15-8A0A075B7B6 117 aa23.47■■□□□ 1.35
CTCF-203ENST00000566078 A0A087WW49 117 aa23.47■■□□□ 1.35
CTCF-203ENST00000566078 UNQ9165/PRO28630Q6UXU0 137 aa23.47■■□□□ 1.35
CTCF-203ENST00000566078 KLHL30-AS1Q8NEE0 82 aa23.47■■□□□ 1.35
CTCF-203ENST00000566078 CITED4Q96RK1 184 aa23.47■■□□□ 1.35
CTCF-203ENST00000566078 RPEL1Q2QD12 228 aa23.46■■□□□ 1.35
CTCF-203ENST00000566078 TOR2AQ5JU69 321 aa23.46■■□□□ 1.35
CTCF-203ENST00000566078 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP23.46■■□□□ 1.35
CTCF-203ENST00000566078 ZNF207O43670 478 aaKnown RBP23.45■■□□□ 1.34
CTCF-203ENST00000566078 PSMB3P49720 205 aa23.45■■□□□ 1.34
CTCF-203ENST00000566078 GUK1Q16774 197 aa23.45■■□□□ 1.34
CTCF-203ENST00000566078 HAGHQ16775 308 aa23.45■■□□□ 1.34
CTCF-203ENST00000566078 DEFB136Q30KP8 78 aa23.45■■□□□ 1.34
CTCF-203ENST00000566078 HSPB1P04792 205 aaKnown RBP23.44■■□□□ 1.34
CTCF-203ENST00000566078 OR10J4P0C629 311 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 PYYP10082 97 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 TMEM190Q8WZ59 177 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 METTL26Q96S19 204 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 PAXXQ9BUH6 204 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 ZNF98A6NK75 572 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 IFNA1P01562 189 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 S100A7P31151 101 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 UBE2L3P68036 154 aaKnown RBP23.44■■□□□ 1.34
CTCF-203ENST00000566078 SRSF3P84103 164 aaKnown RBP23.44■■□□□ 1.34
CTCF-203ENST00000566078 WFDC12Q8WWY7 111 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 CITED2Q99967 270 aaPredicted RBP23.44■■□□□ 1.34
CTCF-203ENST00000566078 EIF5A2Q9GZV4 153 aaKnown RBP23.44■■□□□ 1.34
CTCF-203ENST00000566078 OR51M1Q9H341 326 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 TMEM231Q9H6L2 316 aa23.44■■□□□ 1.34
CTCF-203ENST00000566078 ZNF320A2RRD8 509 aa23.43■■□□□ 1.34
CTCF-203ENST00000566078 RBFOX3A6NFN3 312 aa23.43■■□□□ 1.34
CTCF-203ENST00000566078 JMJD1CQ15652 2540 aa23.43■■□□□ 1.34
CTCF-203ENST00000566078 PPT1P50897 306 aa23.42■■□□□ 1.34
CTCF-203ENST00000566078 FAM106AQ4KMX7 169 aa23.42■■□□□ 1.34
CTCF-203ENST00000566078 GPHB5Q86YW7 130 aa23.42■■□□□ 1.34
CTCF-203ENST00000566078 EIF4E3Q8N5X7 224 aaKnown RBP23.42■■□□□ 1.34
CTCF-203ENST00000566078 STXBP6Q8NFX7 210 aa23.42■■□□□ 1.34
CTCF-203ENST00000566078 MANBALQ9NQG1 85 aa23.42■■□□□ 1.34
CTCF-203ENST00000566078 TMEM167BQ9NRX6 74 aa23.42■■□□□ 1.34
CTCF-203ENST00000566078 TSSC4Q9Y5U2 329 aaPredicted RBP23.42■■□□□ 1.34
CTCF-203ENST00000566078 A0A1B0GUS0 222 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 A0A1W2PRX2 142 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 BCL2P10415 239 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 GP9P14770 177 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 RARRES2Q99969 163 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 LOC102723971A0A1B0GUV8 181 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 NPPCP23582 126 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 PMS2P11Q13670 270 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 C8orf86Q6ZUL3 223 aa23.41■■□□□ 1.34
CTCF-203ENST00000566078 ATP6V1G1O75348 118 aa23.4■■□□□ 1.34
CTCF-203ENST00000566078 CRYBB3P26998 211 aa23.4■■□□□ 1.34
CTCF-203ENST00000566078 HOXD3P31249 432 aaPredicted RBP23.4■■□□□ 1.34
CTCF-203ENST00000566078 UBE2G2P60604 165 aa23.4■■□□□ 1.34
CTCF-203ENST00000566078 LINC01619G3V211 115 aa23.39■■□□□ 1.33
CTCF-203ENST00000566078 ZNF506Q5JVG8 444 aa23.39■■□□□ 1.33
CTCF-203ENST00000566078 UQCC3Q6UW78 93 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms