RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 PRR20BP86481 221 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 PRR20AP86496 221 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 NHLH2Q02577 135 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 AKR1C1Q04828 323 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 PPP1R1CQ8WVI7 109 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 RCHY1Q96PM5 261 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 SCRT1Q9BWW7 348 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 GGTLC1Q9BX51 225 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 SLC25A32Q9H2D1 315 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 EDA2RQ9HAV5 297 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 RABAC1Q9UI14 185 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 U3KQK5 164 aa7.25□□□□□ -1.25
CLN3-220ENST00000566040 AGPAT2O15120 278 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 MPC2O95563 127 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 NHLRC4P0CG21 123 aaPredicted RBP7.24□□□□□ -1.25
CLN3-220ENST00000566040 CAV2P51636 162 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 EWSR1Q01844 656 aaKnown RBP eCLIP7.24□□□□□ -1.25
CLN3-220ENST00000566040 LRRC37A5PQ49AS3 106 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 LEMD1Q68G75 181 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 LAMTOR1Q6IAA8 161 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 TMEM217Q8N7C4 229 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 OR10P1Q8NGE3 313 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 UHRF2Q96PU4 802 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 PBDC1Q9BVG4 233 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 GGACTQ9BVM4 153 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 ALMS1Q8TCU4 4167 aa7.24□□□□□ -1.25
CLN3-220ENST00000566040 SACSQ9NZJ4 4579 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 TRAV8-2A0A0B4J237 113 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 SMCO3A2RU48 225 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 ZNF98A6NK75 572 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 ZNF688P0C7X2 276 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 DEFB131AP59861 70 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 OPCMLQ14982 345 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 GDF5OSQ5U4N7 250 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 SIGLEC15Q6ZMC9 328 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 WFDC3Q8IUB2 231 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 BPIFCQ8NFQ6 507 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 STXBP6Q8NFX7 210 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 TMEM37Q8WXS4 190 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 GRAMD2BQ96HH9 432 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 C20orf173Q96LM9 149 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 SHANK2-AS3Q9BTD1 123 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 WFDC1Q9HC57 220 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 NPVFQ9HCQ7 196 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 DOK5Q9P104 306 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 MBD2Q9UBB5 411 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 RFNGQ9Y644 331 aa7.23□□□□□ -1.25
CLN3-220ENST00000566040 UBE2L5PA0A1B0GUS4 154 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 A0A1W2PS18 150 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 L7N2F9 121 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 SSNA1O43805 119 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 C4BPBP20851 252 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 VAMP2P63027 116 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 C1orf194Q5T5A4 169 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 MIC13Q5XKP0 118 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 TEPPQ6URK8 271 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 TRPT1Q86TN4 253 aaKnown RBP7.22□□□□□ -1.25
CLN3-220ENST00000566040 CHAC2Q8WUX2 184 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 OVOL2Q9BRP0 275 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 TMEM147Q9BVK8 224 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 SLC25A39Q9BZJ4 359 aaPredicted RBP7.22□□□□□ -1.25
CLN3-220ENST00000566040 TMEM231Q9H6L2 316 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 NRN1Q9NPD7 142 aa7.22□□□□□ -1.25
CLN3-220ENST00000566040 RYR3Q15413 4870 aa7.21□□□□□ -1.25
CLN3-220ENST00000566040 LOC102724200A0A096LPH7 203 aaPredicted RBP7.21□□□□□ -1.26
CLN3-220ENST00000566040 KNCNA6PVL3 124 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 E5RGE8 158 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 SCGB2A1O75556 95 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 CD5P06127 495 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 RPL35AP18077 110 aaKnown RBP7.21□□□□□ -1.26
CLN3-220ENST00000566040 ORM2P19652 201 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 BCAP31P51572 246 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 SELENOTP62341 195 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 GCSAMLQ5JQS6 135 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 OR5C1Q8NGR4 320 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 OR1B1Q8NGR6 318 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 ARL6Q9H0F7 186 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 TUBA4BQ9H853 241 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 UQCC1Q9NVA1 299 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 HSPB11Q9Y547 144 aa7.21□□□□□ -1.26
CLN3-220ENST00000566040 HELTA6NFD8 242 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 A8MTW9 85 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 CFDP00746 253 aaPredicted RBP7.2□□□□□ -1.26
CLN3-220ENST00000566040 HLA-DMBP28068 263 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 CAMLGP49069 296 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 CYCSP99999 105 aaKnown RBP7.2□□□□□ -1.26
CLN3-220ENST00000566040 RGS21Q2M5E4 152 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 ZNF546Q86UE3 836 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 SPATA25Q9BR10 227 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 NPCDR1Q9BY65 106 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 ARV1Q9H2C2 271 aa7.2□□□□□ -1.26
CLN3-220ENST00000566040 A0A087X0K7 114 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 TRAV5A0A0B4J249 113 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 KIR2DL5BA0A0G2JN68 375 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 KIR2DL5BA0A0G2JPC4 375 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 RNF222A6NCQ9 220 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 SLC17A3O00476 420 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 FABP1P07148 127 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 PRB4P10163 310 aaPredicted RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 571.2 ms