RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 HBG1P69891 147 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 HBG2P69892 147 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 PRR20EP86478 221 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 PRR20CP86479 221 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 PRR20DP86480 221 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 PRR20BP86481 221 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 PRR20AP86496 221 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 BAXQ07812 192 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 GUCA2BQ16661 112 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 ATP6V1FQ16864 119 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 GCSAMLQ5JQS6 135 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 LEMD1Q68G75 181 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 TCF24Q7RTU0 167 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 GBGT1Q8N5D6 347 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 OR1B1Q8NGR6 318 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 ASB13Q8WXK3 278 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 TMEM37Q8WXS4 190 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 UHRF2Q96PU4 802 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 ATP5SQ99766 215 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 SCRT1Q9BWW7 348 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 ARL6Q9H0F7 186 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 C19orf73Q9NVV2 129 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 RABAC1Q9UI14 185 aa7.32□□□□□ -1.24
CLK3-208ENST00000562626 SCGB2A1O75556 95 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 TFPI2P48307 235 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 EIF2B2P49770 351 aaKnown RBP7.31□□□□□ -1.24
CLK3-208ENST00000562626 PLP1P60201 277 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 ZNF124Q15973 351 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 LCN12Q6JVE5 192 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 OR2K2Q8NGT1 345 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 RSG1Q9BU20 258 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 NPCDR1Q9BY65 106 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 WDR61Q9GZS3 305 aaKnown RBP7.31□□□□□ -1.24
CLK3-208ENST00000562626 SLC25A32Q9H2D1 315 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 SMAD5-AS1Q9Y6J3 95 aa7.31□□□□□ -1.24
CLK3-208ENST00000562626 ZNF98A6NK75 572 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 H3BRN7 92 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 TSPAN4O14817 238 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 ARPC5O15511 151 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 AP2S1P53680 142 aaPredicted RBP7.3□□□□□ -1.24
CLK3-208ENST00000562626 ODF3L2Q3SX64 289 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 ZNF546Q86UE3 836 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 CITED4Q96RK1 184 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 SLC25A39Q9BZJ4 359 aaPredicted RBP7.3□□□□□ -1.24
CLK3-208ENST00000562626 MS4A6AQ9H2W1 248 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 UBQLN2Q9UHD9 624 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 PXMP4Q9Y6I8 212 aa7.3□□□□□ -1.24
CLK3-208ENST00000562626 BIRC6Q9NR09 4857 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 TENM3Q9P273 2699 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 TRAV5A0A0B4J249 113 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 TRAV25A0A0B4J276 109 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 MRPS12O15235 138 aaKnown RBP7.29□□□□□ -1.24
CLK3-208ENST00000562626 HYPMO75409 117 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 EIF3GO75821 320 aaKnown RBP eCLIP7.29□□□□□ -1.24
CLK3-208ENST00000562626 FABP1P07148 127 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 OR5G3P0C626 314 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 CXCL2P19875 107 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 RPL29P47914 159 aaKnown RBP7.29□□□□□ -1.24
CLK3-208ENST00000562626 CD81P60033 236 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 SELENOTP62341 195 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 FGL1Q08830 312 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 SPATA31B1PQ5VZV4 182 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 RBPMS2Q6ZRY4 209 aaKnown RBP7.29□□□□□ -1.24
CLK3-208ENST00000562626 WFDC3Q8IUB2 231 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 DEFB125Q8N687 156 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 MRAPQ8TCY5 172 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 DCANP1Q8TF63 244 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 NEURL2Q9BR09 285 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 SHANK2-AS3Q9BTD1 123 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 ARV1Q9H2C2 271 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 SLC25A22Q9H936 323 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 SLC39A9Q9NUM3 307 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 HIGD1AQ9Y241 93 aa7.29□□□□□ -1.24
CLK3-208ENST00000562626 K7EQG2 157 aa7.28□□□□□ -1.24
CLK3-208ENST00000562626 CFDP00746 253 aaPredicted RBP7.28□□□□□ -1.24
CLK3-208ENST00000562626 SNRPCP09234 159 aaKnown RBP7.28□□□□□ -1.24
CLK3-208ENST00000562626 PRB4P10163 310 aaPredicted RBP7.28□□□□□ -1.24
CLK3-208ENST00000562626 DEFB1P60022 68 aa7.28□□□□□ -1.24
CLK3-208ENST00000562626 B2MP61769 119 aa7.28□□□□□ -1.24
CLK3-208ENST00000562626 RPL7L1Q6DKI1 246 aaKnown RBP7.28□□□□□ -1.24
CLK3-208ENST00000562626 SIGLEC15Q6ZMC9 328 aa7.28□□□□□ -1.24
CLK3-208ENST00000562626 STXBP6Q8NFX7 210 aa7.28□□□□□ -1.24
CLK3-208ENST00000562626 SPAG8Q99932 426 aaPredicted RBP7.28□□□□□ -1.24
CLK3-208ENST00000562626 CYTL1Q9NRR1 136 aa7.28□□□□□ -1.24
CLK3-208ENST00000562626 HUWE1Q7Z6Z7 4374 aaKnown RBP7.28□□□□□ -1.24
CLK3-208ENST00000562626 A0A1W2PS18 150 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 SOCS3O14543 225 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 COX7A2P2O60397 106 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 MPDU1O75352 247 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 RPL11P62913 178 aaKnown RBP7.27□□□□□ -1.25
CLK3-208ENST00000562626 IGFL4Q6B9Z1 124 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 LAMTOR1Q6IAA8 161 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 LINC00305Q7Z4B0 112 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 APRG1Q8IVJ8 170 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 TCTE3Q8IZS6 198 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 HSD17B11Q8NBQ5 300 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 PPP1R14BQ96C90 147 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 GRAMD2BQ96HH9 432 aa7.27□□□□□ -1.25
CLK3-208ENST00000562626 SH3BGRL3Q9H299 93 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms