RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 DUX4L9Q6RFH8 374 aaPredicted RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 FGFRL1Q8N441 504 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 ZNF645Q8N7E2 425 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 TPRX1Q8N7U7 411 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 WDR31Q8NA23 367 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 ZNF563Q8TA94 476 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 CRYGNQ8WXF5 182 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 FGF14Q92915 247 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 NEURL3Q96EH8 262 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 MRPL53Q96EL3 112 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 HSD17B10Q99714 261 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 SFXN3Q9BWM7 321 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 TMEM59Q9BXS4 323 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 JPT2Q9H910 190 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 PRR34Q9NV39 138 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 RARRES3Q9UL19 164 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 ANAPC10Q9UM13 185 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 TIMM9Q9Y5J7 89 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 TRIP11Q15643 1979 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 FOCADQ5VW36 1801 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 CACNA1SQ13698 1873 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 ZNF106Q9H2Y7 1883 aaKnown RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 IGHV1-24A0A0C4DH33 117 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 TRBV7-7A0A0K0K1E9 115 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 SPAARA0A1B0GVQ0 90 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 M0R1B8 84 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 FCN1O00602 326 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 SLC17A2O00624 439 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 NUDT14O95848 222 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 IGHV3-7P01780 117 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 IGHG2P01859 326 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 IGF1P05019 195 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 LGALS2P05162 132 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 HPNP05981 417 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 IGLC6P0CF74 106 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 LINC00694P0DN24 101 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 CPMP14384 443 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 RPL7P18124 248 aaKnown RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 BCL3P20749 454 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 TAS2R45P59539 299 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 PLGLB1Q02325 96 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 PRDX1Q06830 199 aaKnown RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 LOXL1Q08397 574 aaPredicted RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 EIF3IQ13347 325 aaKnown RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 GUSBP1Q15486 140 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 C15orf32Q32M92 178 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 ZNF791Q3KP31 576 aaPredicted RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 Q56UQ5 140 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 C1orf195Q5TG92 126 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 HES3Q5TGS1 186 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 LINC01545Q5VT33 79 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 NCBP2-AS2Q69YL0 99 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 ACP7Q6ZNF0 438 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 Q6ZT83 130 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 ASCL5Q7RTU5 278 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 TEN1Q86WV5 123 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 SBSPONQ8IVN8 264 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 C3orf22Q8N5N4 141 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 LINC00612Q8N6U2 182 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 OR10AC1Q8NH08 325 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 BADQ92934 168 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 BMFQ96LC9 184 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 FOXC2Q99958 501 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 SLC25A39Q9BZJ4 359 aaPredicted RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 PARP12Q9H0J9 701 aaKnown RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 ISG20L2Q9H9L3 353 aaKnown RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 BCL2L10Q9HD36 194 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 IL36BQ9NZH7 164 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 TAAR3PQ9P1P4 343 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 LSM7Q9UK45 103 aaKnown RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 TP53TG3Q9ULZ0 132 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 KLF12Q9Y4X4 402 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 CHCHD2Q9Y6H1 151 aaPredicted RBP2.61□□□□□ -1.99
VPS35-203ENST00000562420 ARL2-SNX15V9GYD0 113 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 BRWD3Q6RI45 1802 aa2.61□□□□□ -1.99
VPS35-203ENST00000562420 HELZP42694 1942 aaKnown RBP2.6□□□□□ -1.99
VPS35-203ENST00000562420 LOC102724200A0A096LPH7 203 aaPredicted RBP2.6□□□□□ -1.99
VPS35-203ENST00000562420 CCL15-CCL14A0A0B4J2E2 113 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 A0A1B0GTH9 108 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 C2orf70A6NJV1 201 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 K7EQG2 157 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 CXCL13O43927 109 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 CST7O76096 145 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 IGHMP01871 453 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 APCSP02743 223 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 SCGB1C2P0DMR2 95 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 P0DMU3 169 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 FAM231AP0DMU4 169 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 FAM231CP0DMU5 169 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 PTGDSP41222 190 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 CXCL5P42830 114 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 VDAC2P45880 294 aaPredicted RBP2.6□□□□□ -1.99
VPS35-203ENST00000562420 RPL34P49207 117 aaKnown RBP2.6□□□□□ -1.99
VPS35-203ENST00000562420 PFN3P60673 137 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 SP4Q02446 784 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 MEF2CQ06413 473 aaPredicted RBP2.6□□□□□ -1.99
VPS35-203ENST00000562420 NMSQ5H8A3 153 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 FAM27D1Q5T7N8 215 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 ZNF550Q7Z398 422 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 SH2D6Q7Z4S9 175 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms