RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 NKX2-1P43699 371 aaPredicted RBP13.63□□□□□ -0.23
VPS35-202ENST00000561713 EMP1P54849 157 aa13.63□□□□□ -0.23
VPS35-202ENST00000561713 AP3S2P59780 193 aa13.63□□□□□ -0.23
VPS35-202ENST00000561713 C1QTNF4Q9BXJ3 329 aa13.63□□□□□ -0.23
VPS35-202ENST00000561713 WRBO00258 174 aa13.62□□□□□ -0.23
VPS35-202ENST00000561713 SFT2D2O95562 160 aa13.62□□□□□ -0.23
VPS35-202ENST00000561713 GATA2P23769 480 aaPredicted RBP13.62□□□□□ -0.23
VPS35-202ENST00000561713 NUTF2P61970 127 aaKnown RBP13.62□□□□□ -0.23
VPS35-202ENST00000561713 RAB11AP62491 216 aa13.62□□□□□ -0.23
VPS35-202ENST00000561713 OR4B1Q8NGF8 309 aa13.62□□□□□ -0.23
VPS35-202ENST00000561713 TRGV9Q99603 122 aa13.62□□□□□ -0.23
VPS35-202ENST00000561713 SLC35B3Q9H1N7 401 aa13.62□□□□□ -0.23
VPS35-202ENST00000561713 SLC25A32Q9H2D1 315 aa13.62□□□□□ -0.23
VPS35-202ENST00000561713 SAV1Q9H4B6 383 aaPredicted RBP13.62□□□□□ -0.23
VPS35-202ENST00000561713 SEPSECSQ9HD40 501 aaKnown RBP13.62□□□□□ -0.23
VPS35-202ENST00000561713 DEFB131BA0A096LNP1 70 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 PRSS46E5RG02 174 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 PSMB3P49720 205 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 GGNBP1Q5YKI7 109 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 FOXI2Q6ZQN5 318 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 OR8I2Q8N0Y5 310 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 CENPSQ8N2Z9 138 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 LRTM2Q8N967 370 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 ZNF709Q8N972 641 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 THAP8Q8NA92 274 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 C20orf173Q96LM9 149 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 SLC25A22Q9H936 323 aa13.61□□□□□ -0.23
VPS35-202ENST00000561713 PRSS29PA6NIE9 313 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 RTL8CO15255 209 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 SYNGR2O43760 224 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 FABP1P07148 127 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 S100A5P33763 92 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 SPANXN5Q5MJ07 72 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 ZNF705AQ6ZN79 300 aaPredicted RBP13.6□□□□□ -0.23
VPS35-202ENST00000561713 TMEM182Q6ZP80 229 aaPredicted RBP13.6□□□□□ -0.23
VPS35-202ENST00000561713 ACOT7LQ6ZUV0 252 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 CCDC190Q86UF4 302 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 RNF126Q9BV68 326 aa13.6□□□□□ -0.23
VPS35-202ENST00000561713 SNRPGP15A8MWD9 76 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 MED6O75586 246 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 ADAP1O75689 374 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 AMBPP02760 352 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 SLC25A6P12236 298 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 ID1P41134 155 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 ATP5IP56385 69 aaPredicted RBP13.59□□□□□ -0.23
VPS35-202ENST00000561713 AKR1C1Q04828 323 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 SLC25A21Q9BQT8 299 aaPredicted RBP13.59□□□□□ -0.23
VPS35-202ENST00000561713 RBM38Q9H0Z9 239 aaKnown RBP13.59□□□□□ -0.23
VPS35-202ENST00000561713 DOK5Q9P104 306 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 PFDN2Q9UHV9 154 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 TMED3Q9Y3Q3 217 aa13.59□□□□□ -0.23
VPS35-202ENST00000561713 ZNF705FA8MVS1 300 aaPredicted RBP13.58□□□□□ -0.24
VPS35-202ENST00000561713 M0R2N4 97 aa13.58□□□□□ -0.24
VPS35-202ENST00000561713 ZNF705DP0CH99 300 aaPredicted RBP13.58□□□□□ -0.24
VPS35-202ENST00000561713 ZNF705BP0CI00 300 aaPredicted RBP13.58□□□□□ -0.24
VPS35-202ENST00000561713 FAM78BQ5VT40 261 aa13.58□□□□□ -0.24
VPS35-202ENST00000561713 POM121L12Q8N7R1 296 aa13.58□□□□□ -0.24
VPS35-202ENST00000561713 C17orf77Q96MU5 243 aa13.58□□□□□ -0.24
VPS35-202ENST00000561713 SRRQ9GZT4 340 aa13.58□□□□□ -0.24
VPS35-202ENST00000561713 MUC4Q99102 2169 aa13.58□□□□□ -0.24
VPS35-202ENST00000561713 LINC00854A0A1B0GVQ3 168 aa13.57□□□□□ -0.24
VPS35-202ENST00000561713 SMCO3A2RU48 225 aa13.57□□□□□ -0.24
VPS35-202ENST00000561713 ORM2P19652 201 aa13.57□□□□□ -0.24
VPS35-202ENST00000561713 C1orf194Q5T5A4 169 aa13.57□□□□□ -0.24
VPS35-202ENST00000561713 C16orf92Q96LL3 132 aa13.57□□□□□ -0.24
VPS35-202ENST00000561713 CIB3Q96Q77 187 aaPredicted RBP13.57□□□□□ -0.24
VPS35-202ENST00000561713 FLVCR2Q9UPI3 526 aa13.57□□□□□ -0.24
VPS35-202ENST00000561713 PIGBOS1A0A0B4J2F0 54 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 ISLRO14498 428 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 CCNKO75909 580 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 PRB4P10163 310 aaPredicted RBP13.56□□□□□ -0.24
VPS35-202ENST00000561713 POLR2GP62487 172 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS35-202ENST00000561713 IGFL4Q6B9Z1 124 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 OR1B1Q8NGR6 318 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 RSG1Q9BU20 258 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 PLA2G2EQ9NZK7 142 aa13.56□□□□□ -0.24
VPS35-202ENST00000561713 NACAE9PAV3 2078 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 A0A0J9YX75 114 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 C9orf170A2RU37 121 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 ZNF98A6NK75 572 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 SSSCA1O60232 199 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 P0DMU3 169 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 FAM231AP0DMU4 169 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 FAM231CP0DMU5 169 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 GALR1P47211 349 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 BAK1Q16611 211 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 RNF182Q8N6D2 247 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 KRTAP4-5Q9BYR2 181 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 STRAPQ9Y3F4 350 aaKnown RBP13.55□□□□□ -0.24
VPS35-202ENST00000561713 HSPG2P98160 4391 aa13.55□□□□□ -0.24
VPS35-202ENST00000561713 PAX9P55771 341 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 PSG9Q00887 426 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 SPANXN2Q5MJ10 180 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 FAM222AQ5U5X8 452 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 TRIQKQ629K1 86 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 EBLN2Q6P2I7 272 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 C1orf158Q8N1D5 194 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 BPIFCQ8NFQ6 507 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 NEU1Q99519 415 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms