RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RAB5CP51148 216 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 RAB9AP51151 201 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 SLURP1P55000 103 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 RIPPLY3P57055 190 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 CCL20P78556 96 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 PSMG4Q5JS54 123 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF429Q86V71 674 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 BAGE2Q86Y30 109 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 OR52E5Q8NH55 327 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 ISOC2Q96AB3 205 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 CHRDL1Q9BU40 450 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 GGTLC1Q9BX51 225 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 HCFC1P51610 2035 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF705GA8MUZ8 300 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-209ENST00000560637 KRBOX1C9JBD0 128 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 CXorf1O96002 111 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 TRBV12-3P01733 135 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 NMBP08949 121 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 PAX9P55771 341 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 ASPHD1Q5U4P2 390 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 CCDC28AQ8IWP9 274 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 LY6G5BQ8NDX9 201 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 RNASEH2CQ8TDP1 164 aaKnown RBP4.3□□□□□ -1.72
VPS13C-209ENST00000560637 MGST2Q99735 147 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF257Q9Y2Q1 563 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 APCP25054 2843 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 TRAV30A0A087WSZ9 112 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 TRAV8-1A0A0A6YYK1 113 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 A0A1B0GWJ7 208 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 F5H697 171 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 CLN5O75503 358 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 HTN3P15516 51 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 RPL7P18124 248 aaKnown RBP4.29□□□□□ -1.72
VPS13C-209ENST00000560637 MAS1LP35410 378 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 SERF2P84101 59 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 PAX5Q02548 391 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF345Q14585 488 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 EBLN2Q6P2I7 272 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF600Q6ZNG1 722 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 TCF24Q7RTU0 167 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 C15orf54Q8N8G6 183 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 SGMS2Q8NHU3 365 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 MRAPQ8TCY5 172 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 ST6GALNAC6Q969X2 333 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 CITED2Q99967 270 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-209ENST00000560637 RHPN1-AS1Q9BWJ2 59 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 PEF1Q9UBV8 284 aaKnown RBP4.29□□□□□ -1.72
VPS13C-209ENST00000560637 UFC1Q9Y3C8 167 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 IGLC7A0M8Q6 106 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 HELTA6NFD8 242 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 H0Y8G0 127 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 ITGB1BP1O14713 200 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 KHDC3LQ587J8 217 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 TMEM78Q5T7P6 136 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 TMEM14EPQ6UXP3 125 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 LRRC75A-AS1Q8N1F1 130 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 C5orf56Q8N8D9 126 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 FOXC2Q99958 501 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 SLC25A39Q9BZJ4 359 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-209ENST00000560637 TMEM167BQ9NRX6 74 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 MRPL36Q9P0J6 103 aaKnown RBP4.29□□□□□ -1.72
VPS13C-209ENST00000560637 WDR83OSQ9Y284 106 aa4.29□□□□□ -1.72
VPS13C-209ENST00000560637 MPDU1O75352 247 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 GCHFRP30047 84 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 DEFB1P60022 68 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 RPL19P84098 196 aaKnown RBP4.28□□□□□ -1.72
VPS13C-209ENST00000560637 IFITM2Q01629 132 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 PMS2P11Q13670 270 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 C2orf83Q53S99 150 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 PQLC2Q6ZP29 291 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 C1QL4Q86Z23 238 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 RPP25LQ8N5L8 163 aaKnown RBP4.28□□□□□ -1.72
VPS13C-209ENST00000560637 RNF182Q8N6D2 247 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 Q8TAT8 98 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 DEFB104AQ8WTQ1 72 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 NCOR1P1Q9H4R4 102 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 TGOLN2O43493 480 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 HLA-DRB1P01911 266 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 PPIFP30405 207 aaKnown RBP4.28□□□□□ -1.72
VPS13C-209ENST00000560637 IER3P46695 156 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 SULT1A2P50226 295 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 FBLN7Q53RD9 439 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 MRPL54Q6P161 138 aaKnown RBP4.28□□□□□ -1.72
VPS13C-209ENST00000560637 TOMM20LQ6UXN7 152 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 ZFP82Q8N141 532 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 SVBPQ8N300 66 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 OR1N2Q8NGR9 330 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 DDB2Q92466 427 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 UBE2E2Q96LR5 201 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 RNF5Q99942 180 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 PARD6GQ9BYG4 376 aaPredicted RBP4.28□□□□□ -1.72
VPS13C-209ENST00000560637 FUT9Q9Y231 359 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 CD5LO43866 347 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 ZP3P21754 424 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 ID1P41134 155 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 PDZD11Q5EBL8 140 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 OR10J6PQ8NGY7 276 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 HIVEP1P15822 2718 aa4.28□□□□□ -1.72
VPS13C-209ENST00000560637 IGKV2-40A0A087WW87 121 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-209ENST00000560637 SCO2A0A1W2PP80 73 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms