RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 H3BP45 60 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 ADAP1O75689 374 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 GATA2P23769 480 aaPredicted RBP7.36□□□□□ -1.23
LDLR-214ENST00000560628 EMP1P54849 157 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 TCTAP57738 103 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 RPP30P78346 268 aaKnown RBP7.36□□□□□ -1.23
LDLR-214ENST00000560628 C12orf74Q32Q52 190 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 C1orf194Q5T5A4 169 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 TMEM182Q6ZP80 229 aaPredicted RBP7.36□□□□□ -1.23
LDLR-214ENST00000560628 THAP8Q8NA92 274 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 COQ8AQ8NI60 647 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 CIB3Q96Q77 187 aaPredicted RBP7.36□□□□□ -1.23
LDLR-214ENST00000560628 SAV1Q9H4B6 383 aaPredicted RBP7.36□□□□□ -1.23
LDLR-214ENST00000560628 FLVCR2Q9UPI3 526 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 IGHV4-4A0A075B6R2 117 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 DEFB131BA0A096LNP1 70 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 C9orf170A2RU37 121 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 PRSS46E5RG02 174 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 SOCS3O14543 225 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 ORM2P19652 201 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 INPP1P49441 399 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 PSMB3P49720 205 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 POLR2GP62487 172 aaKnown RBP eCLIP7.35□□□□□ -1.23
LDLR-214ENST00000560628 BAK1Q16611 211 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 SPANXN2Q5MJ10 180 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 FOXI2Q6ZQN5 318 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 C20orf173Q96LM9 149 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 RSG1Q9BU20 258 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 SCRT1Q9BWW7 348 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 SRRQ9GZT4 340 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 RBM38Q9H0Z9 239 aaKnown RBP7.35□□□□□ -1.23
LDLR-214ENST00000560628 SLC35B3Q9H1N7 401 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 SLC25A22Q9H936 323 aa7.35□□□□□ -1.23
LDLR-214ENST00000560628 STRAPQ9Y3F4 350 aaKnown RBP7.35□□□□□ -1.23
LDLR-214ENST00000560628 KMT2AQ03164 3969 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 ZNF98A6NK75 572 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 ID3Q02535 119 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 AKR1C1Q04828 323 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 FAM78BQ5VT40 261 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 EBLN2Q6P2I7 272 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 ZNF705AQ6ZN79 300 aaPredicted RBP7.34□□□□□ -1.23
LDLR-214ENST00000560628 OR1B1Q8NGR6 318 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 DEDD2Q8WXF8 326 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 C16orf92Q96LL3 132 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 SLC25A32Q9H2D1 315 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 PSENENQ9NZ42 101 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 PLA2G2EQ9NZK7 142 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 DOK5Q9P104 306 aa7.34□□□□□ -1.23
LDLR-214ENST00000560628 SMCO3A2RU48 225 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 ISLRO14498 428 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 NDUFB6O95139 128 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 CFDP00746 253 aaPredicted RBP7.33□□□□□ -1.24
LDLR-214ENST00000560628 ANXA7P20073 488 aaKnown RBP7.33□□□□□ -1.24
LDLR-214ENST00000560628 GALR1P47211 349 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 UBE2MP61081 183 aaKnown RBP7.33□□□□□ -1.24
LDLR-214ENST00000560628 PSG9Q00887 426 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 TRIQKQ629K1 86 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 IGFL4Q6B9Z1 124 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 ACOT7LQ6ZUV0 252 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 ZNF709Q8N972 641 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 BPIFCQ8NFQ6 507 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 C17orf77Q96MU5 243 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 RNF126Q9BV68 326 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 TMEM147Q9BVK8 224 aa7.33□□□□□ -1.24
LDLR-214ENST00000560628 A0A0J9YX75 114 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 NAP1L6A6NFF2 107 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 SMIM9A6NGZ8 99 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 ZNF705FA8MVS1 300 aaPredicted RBP7.32□□□□□ -1.24
LDLR-214ENST00000560628 SSSCA1O60232 199 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 CCNKO75909 580 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 IFNA21P01568 189 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 IL5P05113 134 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 OR4E1P0C645 316 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 ZNF705DP0CH99 300 aaPredicted RBP7.32□□□□□ -1.24
LDLR-214ENST00000560628 ZNF705BP0CI00 300 aaPredicted RBP7.32□□□□□ -1.24
LDLR-214ENST00000560628 SPART-AS1P0CW21 52 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 RRAS2P62070 204 aaPredicted RBP7.32□□□□□ -1.24
LDLR-214ENST00000560628 FGL1Q08830 312 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 C4orf46Q504U0 113 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 CYP2G1PQ6ZSU1 146 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 TMEM144Q7Z5S9 345 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 C1orf158Q8N1D5 194 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 CLUHP3Q96NS8 147 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 NEU1Q99519 415 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 SDHCQ99643 169 aaPredicted RBP7.32□□□□□ -1.24
LDLR-214ENST00000560628 C7orf50Q9BRJ6 194 aaKnown RBP7.32□□□□□ -1.24
LDLR-214ENST00000560628 RPRMQ9NS64 109 aa7.32□□□□□ -1.24
LDLR-214ENST00000560628 PMS2P5A8MQ11 134 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 ZNF701M0R085 212 aaPredicted RBP7.31□□□□□ -1.24
LDLR-214ENST00000560628 SCGB1D2O95969 90 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 METTL15P1P0C7V9 234 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 MEOX2P50222 304 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 PAX9P55771 341 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 SPATA31B1PQ5VZV4 182 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 RNF182Q8N6D2 247 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 OR4D5Q8NGN0 318 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 SMIM8Q96KF7 97 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 GSKIPQ9P0R6 139 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 SLC45A2Q9UMX9 530 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms