RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 ATRAIDQ6UW56 229 aa11.47□□□□□ -0.57
CSPG4P12-202ENST00000559989 PIN1P1O15428 100 aa11.47□□□□□ -0.57
CSPG4P12-202ENST00000559989 FOXG1P55316 489 aaPredicted RBP11.47□□□□□ -0.57
CSPG4P12-202ENST00000559989 KIAA2026Q5HYC2 2103 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 FXYD7P58549 80 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 SUPT4H1P63272 117 aaKnown RBP11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 TRBV25-1A0A075B6N4 114 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 COX6A1P12074 109 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 KLF5Q13887 457 aaPredicted RBP11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 SPATA25Q9BR10 227 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 PMS2P5A8MQ11 134 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 FGF6P10767 208 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 MORN5Q5VZ52 161 aa11.46□□□□□ -0.57
CSPG4P12-202ENST00000559989 MYO7BQ6PIF6 2116 aa11.46□□□□□ -0.58
CSPG4P12-202ENST00000559989 F8VVB4 439 aa11.46□□□□□ -0.58
CSPG4P12-202ENST00000559989 F8VWA3 439 aa11.46□□□□□ -0.58
CSPG4P12-202ENST00000559989 SLAQ13239 276 aa11.46□□□□□ -0.58
CSPG4P12-202ENST00000559989 FBLN5Q9UBX5 448 aa11.46□□□□□ -0.58
CSPG4P12-202ENST00000559989 SYNJ2BPP57105 145 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 MDS2Q8NDY4 140 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 SELENOKQ9Y6D0 94 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 CECR9P0C854 216 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 FAM216BQ8N7L0 139 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 IGHV2OR16-5A0A0B4J2B6 119 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 C17orf100A8MU93 164 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 NRTNQ99748 197 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 C1QTNF5Q9BXJ0 243 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 LIME1Q9H400 295 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 TNRC6CQ9HCJ0 1690 aaKnown RBP11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 SIGLEC1Q9BZZ2 1709 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 LINC00271P0C7V0 271 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 EXOC3-AS1Q8N2X6 119 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 STPG4Q8N801 248 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 DEFB104AQ8WTQ1 72 aa11.45□□□□□ -0.58
CSPG4P12-202ENST00000559989 FAM231BA6NCW3 169 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 CDCP2Q5VXM1 449 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 AGMATQ9BSE5 352 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 SEC16AO15027 2179 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 IL9P15248 144 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 RPL15P61313 204 aaKnown RBP11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 SRSF3P84103 164 aaKnown RBP11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 SRSF7Q16629 238 aaKnown RBP eCLIP11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 ANXA2RQ3ZCQ2 193 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 ZC2HC1BQ5TFG8 222 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 TRGV9Q99603 122 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 TPRP12270 2363 aaKnown RBP11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 KIAA1551Q9HCM1 1747 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 A0A1B0GW64 132 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 C8orf31Q8N9H6 132 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 PTPRFP10586 1907 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 LOC101059948A0A1B0GTJ6 334 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 RNF222A6NCQ9 220 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 STRCP1A6NGW2 1772 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 COL22A1Q8NFW1 1626 aaPredicted RBP11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 MP68P56378 58 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 LIMS2Q7Z4I7 341 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 RNF126Q9BV68 326 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 C9orf139Q6ZV77 190 aa11.44□□□□□ -0.58
CSPG4P12-202ENST00000559989 CXCL1P09341 107 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 C14orf178Q8N769 122 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 DOCK10Q96BY6 2186 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 ZNF831Q5JPB2 1677 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 TRBV6-7A0A0A0MS04 114 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 TRAV40A0A0B4J280 105 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 LCN12Q6JVE5 192 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 LILRA6Q6PI73 481 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 LYPD1Q8N2G4 141 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 C3orf79P0CE67 100 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 DSCR9P59020 149 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 OR11H6Q8NGC7 330 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 PATE3B3GLJ2 98 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 GAGE7O76087 117 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 GAGE12FP0CL80 117 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 GAGE12GP0CL81 117 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 GAGE12IP0CL82 117 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 PFN2P35080 140 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 BMPERQ8N8U9 685 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 TMEM243Q9BU79 118 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 KNCNA6PVL3 124 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 RNF166Q96A37 237 aaPredicted RBP11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 GAGE12HA6NDE8 117 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 CRYBA4P53673 196 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 GFRA4Q9GZZ7 299 aa11.43□□□□□ -0.58
CSPG4P12-202ENST00000559989 I3L3M4 83 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 C15orf32Q32M92 178 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 C19orf48Q6RUI8 117 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 C1QL2Q7Z5L3 287 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 LY96Q9Y6Y9 160 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 FAM223BA6NKX1 122 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 GREM1O60565 184 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 IL17RELQ6ZVW7 336 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 FAM223AQ8IWN6 122 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 LY75O60449 1722 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 F6UB75 175 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 H3BQ85 93 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 CEND1Q8N111 149 aa11.42□□□□□ -0.58
CSPG4P12-202ENST00000559989 USMG5Q96IX5 58 aa11.41□□□□□ -0.58
CSPG4P12-202ENST00000559989 CARD19Q96LW7 228 aa11.41□□□□□ -0.58
CSPG4P12-202ENST00000559989 C14orf132Q9NPU4 83 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms