RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ATP5IP56385 69 aaPredicted RBP12.77□□□□□ -0.37
HDDC3-205ENST00000559898 SNRPD3P62318 126 aaKnown RBP12.77□□□□□ -0.37
HDDC3-205ENST00000559898 RAB11AP62491 216 aa12.77□□□□□ -0.37
HDDC3-205ENST00000559898 SPANXN2Q5MJ10 180 aa12.77□□□□□ -0.37
HDDC3-205ENST00000559898 MFFQ9GZY8 342 aa12.77□□□□□ -0.37
HDDC3-205ENST00000559898 SLC25A32Q9H2D1 315 aa12.77□□□□□ -0.37
HDDC3-205ENST00000559898 HLA-DRB4X5D2U9 266 aa12.77□□□□□ -0.37
HDDC3-205ENST00000559898 SNRPGP15A8MWD9 76 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 IGLL5B9A064 214 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 ZNF701M0R085 212 aaPredicted RBP12.76□□□□□ -0.37
HDDC3-205ENST00000559898 MIFP14174 115 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 NKX2-1P43699 371 aaPredicted RBP12.76□□□□□ -0.37
HDDC3-205ENST00000559898 PAX9P55771 341 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 ID3Q02535 119 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 IGFL4Q6B9Z1 124 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 LGALS9CQ6DKI2 356 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 ACOT7LQ6ZUV0 252 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 OR4D5Q8NGN0 318 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 SLC35B3Q9H1N7 401 aa12.76□□□□□ -0.37
HDDC3-205ENST00000559898 MED6O75586 246 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 OR4E1P0C645 316 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 C12orf74Q32Q52 190 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 TRIQKQ629K1 86 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 ZNF709Q8N972 641 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 C2CD4CQ8TF44 421 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 DEDD2Q8WXF8 326 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 PPP1R14BQ96C90 147 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 SAV1Q9H4B6 383 aaPredicted RBP12.75□□□□□ -0.37
HDDC3-205ENST00000559898 SLC25A22Q9H936 323 aa12.75□□□□□ -0.37
HDDC3-205ENST00000559898 SEPSECSQ9HD40 501 aaKnown RBP12.75□□□□□ -0.37
HDDC3-205ENST00000559898 PLA2G10O15496 165 aa12.74□□□□□ -0.37
HDDC3-205ENST00000559898 SSSCA1O60232 199 aa12.74□□□□□ -0.37
HDDC3-205ENST00000559898 IL7P13232 177 aa12.74□□□□□ -0.37
HDDC3-205ENST00000559898 TMEM41BQ5BJD5 291 aa12.74□□□□□ -0.37
HDDC3-205ENST00000559898 PLA2G2EQ9NZK7 142 aa12.74□□□□□ -0.37
HDDC3-205ENST00000559898 DOK5Q9P104 306 aa12.74□□□□□ -0.37
HDDC3-205ENST00000559898 ZNF98A6NK75 572 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 ORM2P19652 201 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 RRAS2P62070 204 aaPredicted RBP12.73□□□□□ -0.37
HDDC3-205ENST00000559898 AKR1C1Q04828 323 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 C1orf194Q5T5A4 169 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 OR8I2Q8N0Y5 310 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 OR4B1Q8NGF8 309 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 CIB3Q96Q77 187 aaPredicted RBP12.73□□□□□ -0.37
HDDC3-205ENST00000559898 HRH4Q9H3N8 390 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 PSENENQ9NZ42 101 aa12.73□□□□□ -0.37
HDDC3-205ENST00000559898 STRAPQ9Y3F4 350 aaKnown RBP12.73□□□□□ -0.37
HDDC3-205ENST00000559898 IGHV3OR16-12A0A075B7B8 117 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 NAP1L6A6NFF2 107 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 PRM2P04554 102 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 INPP1P49441 399 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 PSMB3P49720 205 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 ARL16Q0P5N6 197 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 ZNF705AQ6ZN79 300 aaPredicted RBP12.72□□□□□ -0.37
HDDC3-205ENST00000559898 OR1B1Q8NGR6 318 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 RSG1Q9BU20 258 aa12.72□□□□□ -0.37
HDDC3-205ENST00000559898 TRAV8-2A0A0B4J237 113 aa12.71□□□□□ -0.37
HDDC3-205ENST00000559898 SMCO3A2RU48 225 aa12.71□□□□□ -0.37
HDDC3-205ENST00000559898 CCSO14618 274 aa12.71□□□□□ -0.37
HDDC3-205ENST00000559898 SCGB1D2O95969 90 aa12.71□□□□□ -0.37
HDDC3-205ENST00000559898 ZNF705DP0CH99 300 aaPredicted RBP12.71□□□□□ -0.37
HDDC3-205ENST00000559898 ZNF705BP0CI00 300 aaPredicted RBP12.71□□□□□ -0.37
HDDC3-205ENST00000559898 FAM78BQ5VT40 261 aa12.71□□□□□ -0.37
HDDC3-205ENST00000559898 FOXI2Q6ZQN5 318 aa12.71□□□□□ -0.37
HDDC3-205ENST00000559898 COQ8AQ8NI60 647 aa12.71□□□□□ -0.37
HDDC3-205ENST00000559898 IGHV4-4A0A075B6R2 117 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 A0A0J9YX75 114 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 ZNF705FA8MVS1 300 aaPredicted RBP12.7□□□□□ -0.38
HDDC3-205ENST00000559898 FABP1P07148 127 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 METTL15P1P0C7V9 234 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 NUP62P37198 522 aaPredicted RBP12.7□□□□□ -0.38
HDDC3-205ENST00000559898 EMP1P54849 157 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 RPP30P78346 268 aaKnown RBP12.7□□□□□ -0.38
HDDC3-205ENST00000559898 C4orf46Q504U0 113 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 CYP2G1PQ6ZSU1 146 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 TMEM144Q7Z5S9 345 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 C1orf158Q8N1D5 194 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 RNF182Q8N6D2 247 aa12.7□□□□□ -0.38
HDDC3-205ENST00000559898 RCL1Q9Y2P8 373 aaKnown RBP12.7□□□□□ -0.38
HDDC3-205ENST00000559898 TRAV10A0A0B4J240 114 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 PIGBOS1A0A0B4J2F0 54 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 H3BRN7 92 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 ISLRO14498 428 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 ID1P41134 155 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 IAH1Q2TAA2 248 aaPredicted RBP12.69□□□□□ -0.38
HDDC3-205ENST00000559898 AMTNQ6UX39 209 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 TMEM14EPQ6UXP3 125 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 PATE2Q6UY27 113 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 ZBTB8BQ8NAP8 495 aaPredicted RBP12.69□□□□□ -0.38
HDDC3-205ENST00000559898 BPIFCQ8NFQ6 507 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 SMIM8Q96KF7 97 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 C16orf92Q96LL3 132 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 UHRF2Q96PU4 802 aa12.69□□□□□ -0.38
HDDC3-205ENST00000559898 C11orf94C9JXX5 98 aa12.68□□□□□ -0.38
HDDC3-205ENST00000559898 NUTF2P61970 127 aaKnown RBP12.68□□□□□ -0.38
HDDC3-205ENST00000559898 SEC22CQ9BRL7 303 aa12.68□□□□□ -0.38
HDDC3-205ENST00000559898 C1QTNF4Q9BXJ3 329 aa12.68□□□□□ -0.38
HDDC3-205ENST00000559898 SLC25A39Q9BZJ4 359 aaPredicted RBP12.68□□□□□ -0.38
HDDC3-205ENST00000559898 GSKIPQ9P0R6 139 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms