RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 NXT2Q9NPJ8 142 aaKnown RBP5.84□□□□□ -1.47
USP3-210ENST00000559192 FAM90A9PA6NNJ1 464 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 IFITM1P13164 125 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 CCL3L1P16619 93 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 CEACAM3P40198 252 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 C10orf55Q5SWW7 151 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 FOXA2Q9Y261 457 aaPredicted RBP5.84□□□□□ -1.47
USP3-210ENST00000559192 V9GYV3 84 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 DIDO1Q9BTC0 2240 aaKnown RBP5.84□□□□□ -1.47
USP3-210ENST00000559192 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.84□□□□□ -1.47
USP3-210ENST00000559192 ZFP36L1Q07352 338 aaKnown RBP5.84□□□□□ -1.47
USP3-210ENST00000559192 DEFB123Q8N688 67 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.84□□□□□ -1.47
USP3-210ENST00000559192 JMJD8Q96S16 334 aa5.84□□□□□ -1.47
USP3-210ENST00000559192 KIR2DL5BA0A0G2JN68 375 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 KIR2DL5BA0A0G2JPC4 375 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 GAGE12JA6NER3 117 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 GAGE7O76087 117 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 TRACP01848 142 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 HBDP02042 147 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 LGALS1P09382 135 aaKnown RBP5.84□□□□□ -1.48
USP3-210ENST00000559192 GAGE12FP0CL80 117 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 GAGE12GP0CL81 117 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 GAGE12IP0CL82 117 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 GAGE1Q13065 139 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 GAGE4Q13068 117 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 ODF3L1Q8IXM7 274 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 KIR2DL5AQ8N109 375 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 C9orf106Q8NAJ2 232 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 YPEL4Q96NS1 127 aa5.84□□□□□ -1.48
USP3-210ENST00000559192 TRGV8A0A0C4DH27 118 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 IGLC2P0DOY2 106 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 IGLC3P0DOY3 106 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 YPEL3P61236 119 aaPredicted RBP5.83□□□□□ -1.48
USP3-210ENST00000559192 CD69Q07108 199 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 SLAQ13239 276 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 CRIP3Q6Q6R5 217 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 COLCA1Q6ZS62 124 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 ASCL5Q7RTU5 278 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 WFDC12Q8WWY7 111 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 C11orf1Q9H5F2 150 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 YAE1D1Q9NRH1 226 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 ZNRD1Q9P1U0 126 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 PCNTO95613 3336 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 ID1P41134 155 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 GAGE5Q13069 117 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 GAGE6Q13070 117 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 C16orf92Q96LL3 132 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 NUP210LQ5VU65 1888 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 TCRBV4S1A1TA0A5B7 111 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 IGKCP01834 107 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 PDLIM4P50479 330 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 GUSBP1Q15486 140 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 RASL11AQ6T310 242 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 ABHD17AQ96GS6 310 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 IGHV1-18A0A0C4DH31 117 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 IGHV3-35A0A0C4DH35 117 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 GAGE12HA6NDE8 117 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 FAM90A27PA6NNH2 459 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 CNTFRP26992 372 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 S100A7L2Q5SY68 101 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 CFAP161Q6P656 301 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 TEX45Q8NA69 505 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 OSR1Q8TAX0 266 aaPredicted RBP5.83□□□□□ -1.48
USP3-210ENST00000559192 C18orf32Q8TCD1 76 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 LY96Q9Y6Y9 160 aa5.83□□□□□ -1.48
USP3-210ENST00000559192 EVI2AP22794 236 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 NPPCP23582 126 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 CDKN1BP46527 198 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 Q6ZPA2 131 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 ZNF329Q86UD4 541 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 CIARTQ8N365 385 aaPredicted RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 CHCHD1Q96BP2 118 aaKnown RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 SDK2Q58EX2 2172 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 CABIN1Q9Y6J0 2220 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 TPRP12270 2363 aaKnown RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 FAM231BA6NCW3 169 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 H3BRM9 83 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 SS18L1O75177 396 aaPredicted RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 PLNP26678 52 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 ECSCRQ19T08 205 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 IGHV3OR16-8A0A075B7F1 116 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 C9orf172C9J069 976 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 SYS1-DBNDD2H3BUS1 97 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 K7EP13 123 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 M0R2P5 195 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 PSG9Q00887 426 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 RTTNQ86VV8 2226 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 ZCCHC24Q8N2G6 241 aaKnown RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 ASXL3Q9C0F0 2248 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 SPAARA0A1B0GVQ0 90 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 KLK10O43240 276 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 CD300EQ496F6 205 aaPredicted RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 FDCSPQ8NFU4 85 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 CACNG8Q8WXS5 425 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 PYGO2Q9BRQ0 406 aa5.82□□□□□ -1.48
USP3-210ENST00000559192 ZNF71Q9NQZ8 489 aaPredicted RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 LSM4Q9Y4Z0 139 aaKnown RBP5.82□□□□□ -1.48
USP3-210ENST00000559192 IGKV1D-17A0A075B6S4 117 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 PF4V1P10720 104 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms