RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ZNF705FA8MVS1 300 aaPredicted RBP7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 ZNF705DP0CH99 300 aaPredicted RBP7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 ZNF705BP0CI00 300 aaPredicted RBP7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 SPART-AS1P0CW21 52 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 P0DMU3 169 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 FAM231AP0DMU4 169 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 FAM231CP0DMU5 169 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 IAPPP10997 89 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 TNFSF8P32971 234 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 FAUP35544 74 aaKnown RBP7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 OR2F1Q13607 317 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 TMEM128Q5BJH2 165 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 LINC00336Q6ZUF6 198 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 TMED4Q7Z7H5 227 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 OR8I2Q8N0Y5 310 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 OR4B1Q8NGF8 309 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 TRGV9Q99603 122 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 SOSTQ9BQB4 213 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 PAIP2BQ9ULR5 123 aaKnown RBP7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 FAT2Q9NYQ8 4349 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 SOCS3O14543 225 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 PITX3O75364 302 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 SPATA31B1PQ5VZV4 182 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 EBLN2Q6P2I7 272 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 POM121L12Q8N7R1 296 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 CLUHP3Q96NS8 147 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 SCRT1Q9BWW7 348 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 RFNGQ9Y644 331 aa7.93□□□□□ -1.14
CCDC88C-213ENST00000557455 TEX48A0A1B0GUV7 120 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 ISLRO14498 428 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 MED6O75586 246 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 CFDP00746 253 aaPredicted RBP7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 VAMP1P23763 118 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 AP3S2P59780 193 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 RPP30P78346 268 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 PSG9Q00887 426 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 ZNF79Q15937 498 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 PYDC2Q56P42 97 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 SPANXN2Q5MJ10 180 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 SAMD13Q5VXD3 122 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 GSG1LQ6UXU4 331 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 TOMM5Q8N4H5 51 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 LRTM2Q8N967 370 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 ZNF709Q8N972 641 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 THAP8Q8NA92 274 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 CIB3Q96Q77 187 aaPredicted RBP7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 C7orf50Q9BRJ6 194 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 SLC35B3Q9H1N7 401 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 RPRMQ9NS64 109 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 KIAA1109Q2LD37 5005 aa7.92□□□□□ -1.14
CCDC88C-213ENST00000557455 IGKV1OR2-108A0A075B7D4 117 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 F6UB75 175 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 IFNA21P01568 189 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 SLC25A6P12236 298 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 GALR1P47211 349 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 MEOX2P50222 304 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 PAX9P55771 341 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 RGS21Q2M5E4 152 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 FAM222AQ5U5X8 452 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 FAM78BQ5VT40 261 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 GGNBP1Q5YKI7 109 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 C16orf92Q96LL3 132 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 NIPSNAP3BQ9BS92 247 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 MAGT1Q9H0U3 335 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 SLC25A22Q9H936 323 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 DKK2Q9UBU2 259 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 GOLT1BQ9Y3E0 138 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 TMED3Q9Y3Q3 217 aa7.91□□□□□ -1.14
CCDC88C-213ENST00000557455 A0A0J9YX75 114 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 M0R2N4 97 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 WRBO00258 174 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 SYNGR2O43760 224 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 HBE1P02100 147 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 UBE2DNLQ8IWF7 75 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 BPIFCQ8NFQ6 507 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 TRIM63Q969Q1 353 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 FAM210BQ96KR6 192 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 SLC25A21Q9BQT8 299 aaPredicted RBP7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 RSG1Q9BU20 258 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 SLC25A32Q9H2D1 315 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 DOK5Q9P104 306 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 SLC45A2Q9UMX9 530 aa7.9□□□□□ -1.14
CCDC88C-213ENST00000557455 LOC102723971A0A1B0GUV8 181 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 ZNF98A6NK75 572 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 PRSS46E5RG02 174 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 SFT2D2O95562 160 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 HOXB5P09067 269 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 HTN3P15516 51 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 ORM2P19652 201 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 GATA2P23769 480 aaPredicted RBP7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 S100A7P31151 101 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 AKR1C1Q04828 323 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 PPP1R1AQ13522 171 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 RRN3P1Q2M238 152 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 SPANXN5Q5MJ07 72 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 C1orf158Q8N1D5 194 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 C20orf173Q96LM9 149 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 TMEM208Q9BTX3 173 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 CCDC32Q9BV29 185 aa7.89□□□□□ -1.15
CCDC88C-213ENST00000557455 PLA2G2EQ9NZK7 142 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms