RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SCRT2Q9NQ03 307 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 ZNF835Q9Y2P0 537 aa13.01□□□□□ -0.33
SHMT2-231ENST00000557433 VSTM5A8MXK1 200 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 IGHV3-48P01763 117 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 CRYGBP07316 175 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 WT1P19544 449 aaPredicted RBP13□□□□□ -0.33
SHMT2-231ENST00000557433 TMEM155Q4W5P6 130 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 BVES-AS1Q5T3Y7 98 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 SRSF8Q9BRL6 282 aaKnown RBP13□□□□□ -0.33
SHMT2-231ENST00000557433 F11RQ9Y624 299 aaKnown RBP13□□□□□ -0.33
SHMT2-231ENST00000557433 LOC105371242A0A075B767 164 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 A0A1B0GUT8 65 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 TOX4O94842 621 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 FAM87AP0C7U9 286 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 HIST1H1AQ02539 215 aaPredicted RBP13□□□□□ -0.33
SHMT2-231ENST00000557433 VAMP3Q15836 100 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 SAPCD1Q5SSQ6 148 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 LINC01545Q5VT33 79 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 LYPD1Q8N2G4 141 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 RNASE8Q8TDE3 154 aaKnown RBP13□□□□□ -0.33
SHMT2-231ENST00000557433 DPF1Q92782 380 aa13□□□□□ -0.33
SHMT2-231ENST00000557433 K7EQM0 130 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 HTR1DP28221 377 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 RBPJQ06330 500 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 FAM27E3Q08E93 113 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 DIAPH2-AS1Q14236 149 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 ADIPOQQ15848 244 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 MPV17L2Q567V2 206 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 HCP5Q6MZN7 132 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 TMEM75Q8N9X5 138 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 SGK494Q96LW2 274 aa12.99□□□□□ -0.33
SHMT2-231ENST00000557433 SH2D7A6NKC9 451 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-231ENST00000557433 CD5LO43866 347 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 NUDT3O95989 172 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 IGHV1-8P0DP01 117 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 Q6ZS92 163 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 TPSG1Q9NRR2 321 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 TAX1BP3O14907 124 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 FCN3O75636 299 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 LOXP28300 417 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-231ENST00000557433 CSN1S1P47710 185 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 FAM57AQ8TBR7 257 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 SCNM1Q9BWG6 230 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 SLC25A39Q9BZJ4 359 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-231ENST00000557433 TMEM133Q9H2Q1 129 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 SIGLEC9Q9Y336 463 aa12.98□□□□□ -0.33
SHMT2-231ENST00000557433 URB1O60287 2271 aaKnown RBP12.97□□□□□ -0.33
SHMT2-231ENST00000557433 FREM2Q5SZK8 3169 aa12.97□□□□□ -0.33
SHMT2-231ENST00000557433 hDV102S1A0JD36 115 aa12.97□□□□□ -0.33
SHMT2-231ENST00000557433 ENSAO43768 121 aaKnown RBP12.97□□□□□ -0.33
SHMT2-231ENST00000557433 IGLV2-11P01706 119 aa12.97□□□□□ -0.33
SHMT2-231ENST00000557433 IGLC1P0CG04 106 aa12.97□□□□□ -0.33
SHMT2-231ENST00000557433 S100A7AQ86SG5 101 aa12.97□□□□□ -0.33
SHMT2-231ENST00000557433 RNF5Q99942 180 aa12.97□□□□□ -0.33
SHMT2-231ENST00000557433 AP5S1Q9NUS5 200 aa12.97□□□□□ -0.33
SHMT2-231ENST00000557433 C16orf97H3BN30 126 aa12.96□□□□□ -0.33
SHMT2-231ENST00000557433 M0QZ24 198 aa12.96□□□□□ -0.33
SHMT2-231ENST00000557433 ANKRD39Q53RE8 183 aa12.96□□□□□ -0.33
SHMT2-231ENST00000557433 LINC00173Q6ZV60 143 aa12.96□□□□□ -0.33
SHMT2-231ENST00000557433 RPRMLQ8N4K4 120 aa12.96□□□□□ -0.33
SHMT2-231ENST00000557433 NEU4Q8WWR8 484 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-231ENST00000557433 COL6A3P12111 3177 aa12.96□□□□□ -0.34
SHMT2-231ENST00000557433 FTH1P19P0C7X4 201 aa12.96□□□□□ -0.34
SHMT2-231ENST00000557433 PSG1P11464 419 aa12.96□□□□□ -0.34
SHMT2-231ENST00000557433 OR10AG1Q8NH19 301 aa12.96□□□□□ -0.34
SHMT2-231ENST00000557433 CADP27708 2225 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 PPBPP02775 128 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 COX8AP10176 69 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 LYZP61626 148 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 GOLT1AQ6ZVE7 132 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 Q6ZVH6 145 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 PRNTQ86SH4 94 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 BPIFA4PQ86YQ2 179 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 CIARTQ8N365 385 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-231ENST00000557433 RITA1Q96K30 269 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 RASL11BQ9BPW5 248 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 TMUB1Q9BVT8 246 aa12.95□□□□□ -0.34
SHMT2-231ENST00000557433 FRYLO94915 3013 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 OVOL3O00110 214 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 C22orf34Q6ZV56 151 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 FA2HQ7L5A8 372 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 PPP1R27Q86WC6 154 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 NGBQ9NPG2 151 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 TRBV19A0A075B6N1 114 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 TEX22C9J3V5 150 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 SEC11AP67812 179 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 RUSC1-AS1Q66K80 236 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 LYPD2Q6UXB3 125 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 ZNF493Q6ZR52 646 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 ARL6IP6Q8N6S5 226 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 CCL17Q92583 94 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 SHANK2-AS3Q9BTD1 123 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 ZNF747Q9BV97 191 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 CTSZQ9UBR2 303 aa12.94□□□□□ -0.34
SHMT2-231ENST00000557433 GPR179Q6PRD1 2367 aa12.93□□□□□ -0.34
SHMT2-231ENST00000557433 SERTM2A0A1B0GWG4 89 aa12.93□□□□□ -0.34
SHMT2-231ENST00000557433 I3L2K1 104 aa12.93□□□□□ -0.34
SHMT2-231ENST00000557433 K7EM74 188 aa12.93□□□□□ -0.34
SHMT2-231ENST00000557433 GPR183P32249 361 aa12.93□□□□□ -0.34
SHMT2-231ENST00000557433 OR1N2Q8NGR9 330 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms