RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 OPRK1P41145 380 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 EMP1P54849 157 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 SNRPD3P62318 126 aaKnown RBP9.04□□□□□ -0.96
SHMT2-223ENST00000556689 SUPT4H1P63272 117 aaKnown RBP9.04□□□□□ -0.96
SHMT2-223ENST00000556689 SP6Q3SY56 376 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 RNF212Q495C1 297 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 C16orf54Q6UWD8 224 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 GSG1LQ6UXU4 331 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 LRTM2Q8N967 370 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 NEU1Q99519 415 aa9.04□□□□□ -0.96
SHMT2-223ENST00000556689 FNDC4Q9H6D8 234 aaPredicted RBP9.04□□□□□ -0.96
SHMT2-223ENST00000556689 A0A0B4J293 547 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 C5orf51A6NDU8 294 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 SMIM9A6NGZ8 99 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 FAM25EA8MYX2 175 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 GOSR2O14653 212 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 CDS2O95674 445 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 IGKV1-17P01599 117 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 PET100P0DJ07 73 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 RRAS2P62070 204 aaPredicted RBP9.03□□□□□ -0.96
SHMT2-223ENST00000556689 TIGITQ495A1 244 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 Q6ZNX1 250 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 Q8WTZ3 238 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 GLYATL2Q8WU03 294 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 GLMPQ8WWB7 406 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 ASB13Q8WXK3 278 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 SEPSECSQ9HD40 501 aaKnown RBP9.03□□□□□ -0.96
SHMT2-223ENST00000556689 ENY2Q9NPA8 101 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 MGAT4CQ9UBM8 478 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 TMEM56-RWDD3S4R434 201 aa9.03□□□□□ -0.96
SHMT2-223ENST00000556689 IGKV1-5P01602 117 aa9.02□□□□□ -0.97
SHMT2-223ENST00000556689 HNRNPCP07910 306 aaKnown RBP eCLIP9.02□□□□□ -0.97
SHMT2-223ENST00000556689 SULT1A3P0DMM9 295 aa9.02□□□□□ -0.97
SHMT2-223ENST00000556689 SULT1A4P0DMN0 295 aa9.02□□□□□ -0.97
SHMT2-223ENST00000556689 CYCSP99999 105 aaKnown RBP9.02□□□□□ -0.97
SHMT2-223ENST00000556689 ZNF705AQ6ZN79 300 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-223ENST00000556689 OR1S1Q8NH92 325 aa9.02□□□□□ -0.97
SHMT2-223ENST00000556689 NIPSNAP3BQ9BS92 247 aa9.02□□□□□ -0.97
SHMT2-223ENST00000556689 RPS10-NUDT3A0A1W2PQS6 291 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 ZNF705FA8MVS1 300 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-223ENST00000556689 C16orf90A8MZG2 172 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 FAM90A26D6RGX4 464 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 WRBO00258 174 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 HOXB5P09067 269 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 ZNF705DP0CH99 300 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-223ENST00000556689 ZNF705BP0CI00 300 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-223ENST00000556689 HOXA1P49639 335 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-223ENST00000556689 SMCO1Q147U7 214 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 SELENOHQ8IZQ5 122 aaKnown RBP9.01□□□□□ -0.97
SHMT2-223ENST00000556689 NRN1Q9NPD7 142 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 DKK2Q9UBU2 259 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 RFNGQ9Y644 331 aa9.01□□□□□ -0.97
SHMT2-223ENST00000556689 IGHV3OR16-12A0A075B7B8 117 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 TEX48A0A1B0GUV7 120 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 CDK2AP2O75956 126 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 P0C879 139 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 HLA-DRB4P13762 266 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 HTN3P15516 51 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 NKX2-1P43699 371 aaPredicted RBP9□□□□□ -0.97
SHMT2-223ENST00000556689 YPEL3P61236 119 aaPredicted RBP9□□□□□ -0.97
SHMT2-223ENST00000556689 IAH1Q2TAA2 248 aaPredicted RBP9□□□□□ -0.97
SHMT2-223ENST00000556689 FAM222AQ5U5X8 452 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 AKAP14Q86UN6 197 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 OR1S2Q8NGQ3 325 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 PRR13Q9NZ81 148 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 HLA-DRB4X5D2U9 266 aa9□□□□□ -0.97
SHMT2-223ENST00000556689 MED6O75586 246 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 SCGB1D2O95969 90 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 IGKV3-20P01619 116 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 IGLC1P0CG04 106 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 SLC25A6P12236 298 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 PVALBP20472 110 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-223ENST00000556689 HTR2BP41595 481 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 FXYD7P58549 80 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 FGL1Q08830 312 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 BSXQ3C1V8 233 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 GGNBP1Q5YKI7 109 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 LYZL2Q7Z4W2 148 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 MAPKAPK5-AS1Q8N8E1 139 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-223ENST00000556689 CACNG5Q9UF02 275 aa8.99□□□□□ -0.97
SHMT2-223ENST00000556689 LRP1BQ9NZR2 4599 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 CCSO14618 274 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 BUB3O43684 328 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 ADAP1O75689 374 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 IL4P05112 153 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 GIPP09681 153 aaPredicted RBP8.98□□□□□ -0.97
SHMT2-223ENST00000556689 SLC25A4P12235 298 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 OR10J1P30954 320 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 BCAP31P51572 246 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 FAM3BP58499 235 aaPredicted RBP8.98□□□□□ -0.97
SHMT2-223ENST00000556689 TNP2Q05952 138 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 USF2Q15853 346 aaPredicted RBP8.98□□□□□ -0.97
SHMT2-223ENST00000556689 PRSS54Q6PEW0 395 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 SIGLEC15Q6ZMC9 328 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 LHFPL5Q8TAF8 219 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 C2orf50Q96LR7 162 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 GSKIPQ9P0R6 139 aa8.98□□□□□ -0.97
SHMT2-223ENST00000556689 PFDN1O60925 122 aa8.97□□□□□ -0.97
SHMT2-223ENST00000556689 RLN2P04090 185 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms