RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TMEM222Q9H0R3 208 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 CACFD1Q9UGQ2 172 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 CELA1Q9UNI1 258 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 RORCP51449 518 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 VBP1P61758 197 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 SSBP1Q04837 148 aaKnown RBP7.17□□□□□ -1.26
SCFD1-220ENST00000556486 SURF2Q15527 256 aaPredicted RBP7.17□□□□□ -1.26
SCFD1-220ENST00000556486 C2orf83Q53S99 150 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 PRSS54Q6PEW0 395 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 TMEM229BQ8NBD8 167 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 OR1S2Q8NGQ3 325 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 OR52I2Q8NH67 350 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 AP3S1Q92572 193 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 TMEM230Q96A57 120 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 C8orf49Q96NF6 230 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 C1QTNF4Q9BXJ3 329 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 ENY2Q9NPA8 101 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.17□□□□□ -1.26
SCFD1-220ENST00000556486 COPZ2Q9P299 210 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 TBC1D24Q9ULP9 559 aa7.17□□□□□ -1.26
SCFD1-220ENST00000556486 KNCNA6PVL3 124 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 BUB3O43684 328 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 VPREB1P12018 145 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 TAS2R19P59542 299 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 NUTF2P61970 127 aaKnown RBP7.16□□□□□ -1.26
SCFD1-220ENST00000556486 TRIM16LQ309B1 348 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 SP6Q3SY56 376 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 TIGITQ495A1 244 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 ACTL10Q5JWF8 245 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 UBE2DNLQ8IWF7 75 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 OR4D10Q8NGI6 311 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 OR13C8Q8NGS7 320 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 Q8WTZ3 238 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 GLYATL2Q8WU03 294 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 RBPMSQ93062 196 aaKnown RBP7.16□□□□□ -1.26
SCFD1-220ENST00000556486 RAB40CQ96S21 281 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 SCRT2Q9NQ03 307 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 CLEC5AQ9NY25 188 aa7.16□□□□□ -1.26
SCFD1-220ENST00000556486 DEFB131BA0A096LNP1 70 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 FAM90A26D6RGX4 464 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 H3BMM0 161 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 GABARAPH6UMI1 98 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 GABARAPO95166 117 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 IFNA10P01566 189 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 P0DMU3 169 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 FAM231AP0DMU4 169 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 FAM231CP0DMU5 169 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 HOXA5P20719 270 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 OR10J1P30954 320 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 RND2P52198 227 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 SNRPD3P62318 126 aaKnown RBP7.15□□□□□ -1.26
SCFD1-220ENST00000556486 MRPS10P82664 201 aaKnown RBP7.15□□□□□ -1.26
SCFD1-220ENST00000556486 DHODHQ02127 395 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 DHRS2Q13268 280 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 USF2Q15853 346 aaPredicted RBP7.15□□□□□ -1.26
SCFD1-220ENST00000556486 CTF1Q16619 201 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 C12orf74Q32Q52 190 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 LGALS9BQ3B8N2 356 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 NMSQ5H8A3 153 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 ZNF705AQ6ZN79 300 aaPredicted RBP7.15□□□□□ -1.26
SCFD1-220ENST00000556486 SLC24A4Q8NFF2 622 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 LHFPL5Q8TAF8 219 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 C20orf173Q96LM9 149 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 RTBDNQ9BSG5 229 aaPredicted RBP7.15□□□□□ -1.26
SCFD1-220ENST00000556486 NRN1Q9NPD7 142 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 TMEM56-RWDD3S4R434 201 aa7.15□□□□□ -1.26
SCFD1-220ENST00000556486 TEX13DA0A0J9YY54 714 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-220ENST00000556486 ZNF705FA8MVS1 300 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-220ENST00000556486 GSTZ1O43708 216 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-220ENST00000556486 CDK2AP2O75956 126 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 RAB3DO95716 219 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 TOMM40O96008 361 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 OR5AC1P0C628 307 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 ZNF705DP0CH99 300 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-220ENST00000556486 ZNF705BP0CI00 300 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-220ENST00000556486 TNFSF8P32971 234 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 NKX2-1P43699 371 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-220ENST00000556486 MEF2DQ14814 521 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 PSMG4Q5JS54 123 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 ETFRF1Q6IPR1 90 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 STEAP1BQ6NZ63 245 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 Q6ZR54 194 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 Q8N1X5 172 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 CENPSQ8N2Z9 138 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 MARCH1Q8TCQ1 289 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 IL22RA2Q969J5 263 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 NDUFAF3Q9BU61 184 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 NAA60Q9H7X0 242 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 EXTL2Q9UBQ6 330 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 CACNG5Q9UF02 275 aa7.14□□□□□ -1.27
SCFD1-220ENST00000556486 TMEM189A5PLL7 270 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 SMIM9A6NGZ8 99 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 CRYM-AS1A6NIL9 109 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 FAM25AB3EWG3 89 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 FAM25CB3EWG5 89 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 FAM25GB3EWG6 89 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 IL4P05112 153 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 HLA-DRB4P13762 266 aa7.13□□□□□ -1.27
SCFD1-220ENST00000556486 NUP62P37198 522 aaPredicted RBP7.13□□□□□ -1.27
SCFD1-220ENST00000556486 ATP5IP56385 69 aaPredicted RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms