RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 FAM231CP0DMU5 169 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 SMIM10L2AP0DMW4 78 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 SMIM10L2BP0DMW5 78 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 HIST1H1DP16402 221 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 ADCYAP1P18509 176 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 CCL1P22362 96 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 FKBP2P26885 142 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 PSMB8P28062 276 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 CCR2P41597 374 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 PPICP45877 212 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 TAS2R46P59540 309 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 RPS24P62847 133 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 CATR1Q13166 79 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 DIAPH2-AS1Q14236 149 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 MMDQ15546 238 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 BATFQ16520 125 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 IQCJQ1A5X6 159 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 Q499Y3 187 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 MEIG1Q5JSS6 88 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 Q6AWC8 147 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 EIF5AL1Q6IS14 154 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 Q6Q795 121 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 UNQ5815/PRO19632Q6UWF5 114 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 ZNF705AQ6ZN79 300 aaPredicted RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 TCF23Q7RTU1 214 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 MRPL55Q7Z7F7 128 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 SGPP2Q8IWX5 399 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 LINC00471Q8N535 108 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 C3orf22Q8N5N4 141 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 ZDHHC22Q8N966 263 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 OR8S1Q8NH09 359 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 LMX1AQ8TE12 382 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 CT55Q8WUE5 264 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 KLK6Q92876 244 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 EEF1AKMT3Q96AZ1 226 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 DPH3Q96FX2 82 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 ZC2HC1AQ96GY0 325 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 CIB3Q96Q77 187 aaPredicted RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 YPEL2Q96QA6 119 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 PITX2Q99697 317 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 SNRNP25Q9BV90 132 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 SFXN3Q9BWM7 321 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 ZNF471Q9BX82 626 aaPredicted RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 SEC11CQ9BY50 192 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 DPY30Q9C005 99 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 WDR61Q9GZS3 305 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 SLIRPQ9GZT3 109 aaKnown RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 POMKQ9H5K3 350 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 EDA2RQ9HAV5 297 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 HEBP1Q9NRV9 189 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 BET1LQ9NYM9 111 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 TAS2R8Q9NYW2 309 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 TVP23BQ9NYZ1 205 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 DNAJC27Q9NZQ0 273 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 RBM12B-AS1Q9P1G2 102 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 MTFP1Q9UDX5 166 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 KLF13Q9Y2Y9 288 aaPredicted RBP1.34□□□□□ -2.19
VRK1-202ENST00000553683 MYOM2P54296 1465 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 GOLGA3Q08378 1498 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 MROH2AA6NES4 1674 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 CACNA1SQ13698 1873 aa1.34□□□□□ -2.19
VRK1-202ENST00000553683 SPTAN1Q13813 2472 aaKnown RBP1.34□□□□□ -2.2
VRK1-202ENST00000553683 ZFYVE26Q68DK2 2539 aa1.34□□□□□ -2.2
VRK1-202ENST00000553683 PLXNB1O43157 2135 aa1.34□□□□□ -2.2
VRK1-202ENST00000553683 AK9Q5TCS8 1911 aa1.34□□□□□ -2.2
VRK1-202ENST00000553683 VPS13AQ96RL7 3174 aa1.34□□□□□ -2.2
VRK1-202ENST00000553683 NOTCH1P46531 2555 aa1.34□□□□□ -2.2
VRK1-202ENST00000553683 TIAM1Q13009 1591 aa1.34□□□□□ -2.2
VRK1-202ENST00000553683 CEP250Q9BV73 2442 aa1.34□□□□□ -2.2
VRK1-202ENST00000553683 NCOR2Q9Y618 2525 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ZZEF1O43149 2961 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 PTPRZ1P23471 2315 aaPredicted RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 ERVK-7P63135 1459 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 NALCNQ8IZF0 1738 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 MARF1Q9Y4F3 1742 aaKnown RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 IGHV3OR16-9A0A0B4J2B5 98 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 IGKV1-8A0A0C4DH67 115 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 A0A0D9SG52 128 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 FAM236AA0A1B0GUQ0 79 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 FAM236BA0A1B0GV22 79 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 LOC107986453A0A1B0GWG9 222 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 IGLC7A0M8Q6 106 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 C7orf71A4D174 169 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 IZUMO1RA6ND01 250 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 FAM183AA6NL82 134 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 OR4C45A6NMZ5 311 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 RIIAD1A6NNX1 92 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ZNF670-ZNF695F2Z2N8 137 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 FNDC10F2Z333 226 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 G3V3Q6 166 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 H7C1H1 209 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 J3QR89 54 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 K7EPK0 472 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BKO60814 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 DEDDO75618 318 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ARL6IP5O75915 188 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 NCR2O95944 276 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 KRASP01116 189 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 MT-ATP8P03928 68 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 EIF4EP06730 217 aaKnown RBP1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms