RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GNG4P50150 75 aa20.62■□□□□ 0.89
CCDC88C-205ENST00000553403 CRIP2P52943 208 aaPredicted RBP20.62■□□□□ 0.89
CCDC88C-205ENST00000553403 LOXL1Q08397 574 aaPredicted RBP20.62■□□□□ 0.89
CCDC88C-205ENST00000553403 IMMP2LQ96T52 175 aa20.62■□□□□ 0.89
CCDC88C-205ENST00000553403 TAS2R60P59551 318 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 CENPWQ5EE01 88 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 LURAP1LQ8IV03 231 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 TRBV9A0A0B4J1U6 114 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 A6NDX4 124 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 IL4P05112 153 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 KRTAP10-9P60411 292 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 DEFB113Q30KQ7 82 aa20.61■□□□□ 0.89
CCDC88C-205ENST00000553403 AVPP01185 164 aa20.6■□□□□ 0.89
CCDC88C-205ENST00000553403 AMY1AP04745 511 aa20.6■□□□□ 0.89
CCDC88C-205ENST00000553403 LEMD1Q68G75 181 aa20.6■□□□□ 0.89
CCDC88C-205ENST00000553403 TEX38Q6PEX7 206 aa20.6■□□□□ 0.89
CCDC88C-205ENST00000553403 ZNF600Q6ZNG1 722 aa20.6■□□□□ 0.89
CCDC88C-205ENST00000553403 NECAP1Q8NC96 275 aa20.6■□□□□ 0.89
CCDC88C-205ENST00000553403 TMEM190Q8WZ59 177 aa20.6■□□□□ 0.89
CCDC88C-205ENST00000553403 LINC01548A6NM66 108 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 K7EN84 100 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 PEX7O00628 323 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 HIST1H1EP10412 219 aaKnown RBP20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 KCNIP4Q6PIL6 250 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 OR10G8Q8NGN5 311 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 BLNKQ8WV28 456 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 CDC42EP3Q9UKI2 254 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 RNF24Q9Y225 148 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 ABCA12Q86UK0 2595 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 APCP25054 2843 aa20.59■□□□□ 0.89
CCDC88C-205ENST00000553403 SH2D7A6NKC9 451 aaPredicted RBP20.58■□□□□ 0.89
CCDC88C-205ENST00000553403 CNN1P51911 297 aaKnown RBP20.58■□□□□ 0.89
CCDC88C-205ENST00000553403 RANP62826 216 aaKnown RBP20.58■□□□□ 0.89
CCDC88C-205ENST00000553403 ZNF502Q8TBZ5 544 aa20.58■□□□□ 0.89
CCDC88C-205ENST00000553403 IGF2BP2-AS1Q96M15 143 aa20.58■□□□□ 0.89
CCDC88C-205ENST00000553403 TACC2O95359 2948 aa20.58■□□□□ 0.89
CCDC88C-205ENST00000553403 GGCTO75223 188 aaKnown RBP20.58■□□□□ 0.88
CCDC88C-205ENST00000553403 HNF1AP20823 631 aa20.58■□□□□ 0.88
CCDC88C-205ENST00000553403 RHOGP84095 191 aa20.58■□□□□ 0.88
CCDC88C-205ENST00000553403 C19orf54Q5BKX5 351 aa20.58■□□□□ 0.88
CCDC88C-205ENST00000553403 EPDR1Q9UM22 224 aa20.58■□□□□ 0.88
CCDC88C-205ENST00000553403 G3V318 75 aa20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 M0QZK8 103 aa20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 CTSGP08311 255 aa20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 BPIFA4PQ86YQ2 179 aa20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 SAV1Q9H4B6 383 aaPredicted RBP20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 GAR1Q9NY12 217 aaKnown RBP20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 PITPNC1Q9UKF7 332 aa20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 SOX21Q9Y651 276 aaPredicted RBP20.57■□□□□ 0.88
CCDC88C-205ENST00000553403 MYO9AB2RTY4 2548 aa20.56■□□□□ 0.88
CCDC88C-205ENST00000553403 PGPA6NDG6 321 aa20.56■□□□□ 0.88
CCDC88C-205ENST00000553403 H3BUX3 64 aa20.56■□□□□ 0.88
CCDC88C-205ENST00000553403 IGHV3-23P01764 117 aa20.56■□□□□ 0.88
CCDC88C-205ENST00000553403 C15orf32Q32M92 178 aa20.56■□□□□ 0.88
CCDC88C-205ENST00000553403 BTF3L4Q96K17 158 aa20.56■□□□□ 0.88
CCDC88C-205ENST00000553403 OR2T8A6NH00 312 aa20.55■□□□□ 0.88
CCDC88C-205ENST00000553403 SLC25A5P05141 298 aaKnown RBP20.55■□□□□ 0.88
CCDC88C-205ENST00000553403 USF2Q15853 346 aaPredicted RBP20.55■□□□□ 0.88
CCDC88C-205ENST00000553403 SRD5A3Q9H8P0 318 aa20.55■□□□□ 0.88
CCDC88C-205ENST00000553403 TRAV41A0A0B4J266 112 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 GCGP01275 180 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 FOXL1Q12952 345 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 C5orf17Q8NAS9 161 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 Q9H3A6 140 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 OTORQ9NRC9 128 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 ZNF586Q9NXT0 402 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 IGLV2-8P01709 118 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 S100A6P06703 90 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 OR4F17Q8NGA8 305 aa20.54■□□□□ 0.88
CCDC88C-205ENST00000553403 ZNF98A6NK75 572 aa20.53■□□□□ 0.88
CCDC88C-205ENST00000553403 S100A9P06702 114 aaKnown RBP20.53■□□□□ 0.88
CCDC88C-205ENST00000553403 SNRPCP09234 159 aaKnown RBP20.53■□□□□ 0.88
CCDC88C-205ENST00000553403 LY6EQ16553 131 aa20.53■□□□□ 0.88
CCDC88C-205ENST00000553403 ABCA1O95477 2261 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 RNF223E7ERA6 249 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 TYMSP04818 313 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 IGF1P05019 195 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 S100A7P31151 101 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 TMEM183BQ1AE95 376 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 EEF1AKMT3Q96AZ1 226 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 ATP6V0BQ99437 205 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 CHRDL1Q9BU40 450 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 OSTCQ9NRP0 149 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 KLF12Q9Y4X4 402 aa20.52■□□□□ 0.88
CCDC88C-205ENST00000553403 TRBV7-1A0A0A6YYK4 115 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 A0A1W2PPQ1 181 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 C5orf52A6NGY3 159 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 MRPS12O15235 138 aaKnown RBP20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 TGFAP01135 160 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 ADMP35318 185 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 MBD6Q96DN6 1003 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 ATG101Q9BSB4 218 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 SPG11Q96JI7 2443 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 FBN2P35556 2912 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 PPP5D1E7EU14 171 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 IGHG2P01859 326 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 TRGC2P03986 189 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 IGLC2P0DOY2 106 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 GNG5P63218 68 aa20.51■□□□□ 0.87
CCDC88C-205ENST00000553403 Q5PR19 223 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 300.3 ms