RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 IL34Q6ZMJ4 242 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 RPP25LQ8N5L8 163 aaKnown RBP7.3□□□□□ -1.24
LIMA1-211ENST00000552338 C11orf44Q8N8P7 122 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 LYPD6BQ8NI32 183 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 LRRC20Q8TCA0 184 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 MBD3L1Q8WWY6 194 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 OR5B12Q96R08 314 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 RPRMQ9NS64 109 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 UFC1Q9Y3C8 167 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 RFNGQ9Y644 331 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 WNK1Q9H4A3 2382 aa7.3□□□□□ -1.24
LIMA1-211ENST00000552338 FBN1P35555 2871 aaKnown RBP7.29□□□□□ -1.24
LIMA1-211ENST00000552338 TMEM213A2RRL7 107 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 NUDT19A8MXV4 375 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 CD5P06127 495 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 NPPCP23582 126 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 PMS2P11Q13670 270 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 DEFB136Q30KP8 78 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 C3orf56Q8N813 242 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 LINC00482Q8N8I6 264 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 ZNF680Q8NEM1 530 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 OR9G4Q8NGQ1 327 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 SUN5Q8TC36 379 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 RNF141Q8WVD5 230 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 DLX4Q92988 240 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-211ENST00000552338 SAT2Q96F10 170 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-211ENST00000552338 SHANK2-AS3Q9BTD1 123 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 SLC25A39Q9BZJ4 359 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-211ENST00000552338 PEMTQ9UBM1 199 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 PFDN2Q9UHV9 154 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 RABAC1Q9UI14 185 aa7.29□□□□□ -1.24
LIMA1-211ENST00000552338 TRAV1-1A0A0B4J248 108 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 IGHV7-4-1A0A0J9YVY3 117 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 A0A1W2PS18 150 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 C2orf70A6NJV1 201 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 ZNF98A6NK75 572 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 RGS13O14921 159 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 MRPS12O15235 138 aaKnown RBP7.28□□□□□ -1.24
LIMA1-211ENST00000552338 WIPF1O43516 503 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 IFNA7P01567 189 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 STAG3L2P0CL84 134 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 STAG3L3P0CL85 134 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 SLURP1P55000 103 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 LYZP61626 148 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 RHOBP62745 196 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 KHDC1LQ5JSQ8 128 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 AKR1C8PQ5T2L2 129 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 C10orf113Q5VZT2 155 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 FAM90A2PQ658T7 463 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 C16orf54Q6UWD8 224 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 ZNF767PQ75MW2 155 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 OR10G4Q8NGN3 311 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 OR10G9Q8NGN4 311 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 OR10G7Q8NGN6 311 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 TMED6Q8WW62 240 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 FAM167A-AS1Q96KT0 104 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 GPR82Q96P67 336 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 METTL26Q96S19 204 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 MDFIQ99750 246 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 SEPSECSQ9HD40 501 aaKnown RBP7.28□□□□□ -1.24
LIMA1-211ENST00000552338 TMEM14CQ9P0S9 112 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 SMPXQ9UHP9 88 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 FUT9Q9Y231 359 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 HIGD1AQ9Y241 93 aa7.28□□□□□ -1.24
LIMA1-211ENST00000552338 IGHV3-35A0A0C4DH35 117 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 CTXND1A0A1B0GTU2 59 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 OVOL1O14753 267 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 CHEK1O14757 476 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 COX7A2P2O60397 106 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 CSN3P07498 182 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 ORM2P19652 201 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 CBLN1P23435 193 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 BMI1P35226 326 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 SYNJ2BPP57105 145 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 RAB2AP61019 212 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 ZNF726P1Q15940 193 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 NSUN5P1Q3KNT7 163 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 GCSAMLQ5JQS6 135 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 FAM78BQ5VT40 261 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 ADAMTSL5Q6ZMM2 481 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 PQLC2Q6ZP29 291 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 LINC00305Q7Z4B0 112 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 STXBP6Q8NFX7 210 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 OR1B1Q8NGR6 318 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 SPATA3Q8NHX4 192 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 GLMPQ8WWB7 406 aa7.27□□□□□ -1.25
LIMA1-211ENST00000552338 ACTR3CQ9C0K3 210 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-211ENST00000552338 A0A1W2PRX2 142 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 M0QZ24 198 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 CDC34P49427 236 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-211ENST00000552338 INSL3P51460 131 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 TAS2R45P59539 299 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 BLOC1S1P78537 153 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 TM4SF20Q53R12 229 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 MORN5Q5VZ52 161 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 HIST2H2BDQ6DRA6 164 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 ALKAL2Q6UX46 152 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 OR2K2Q8NGT1 345 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 RAB24Q969Q5 203 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 ZNF503Q96F45 646 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms