RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 DYNLT3P51808 116 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 LCN6P62502 163 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 ARHGEF28Q8N1W1 1705 aaKnown RBP1.19□□□□□ -2.22
VPS29-205ENST00000548539 FAM19A2Q8N3H0 131 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 Q8N814 137 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 OR10K1Q8NGX5 313 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 OR13C6PQ8NH95 151 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 TMEM254Q8TBM7 123 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 NPCDR1Q9BY65 106 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 BRWD1Q9NSI6 2320 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 SSR3Q9UNL2 185 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 C22orf24Q9Y442 160 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 KIF1BO60333 1816 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 LOC110117498A0A087WWA1 95 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 AIPO00170 330 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 GGCTO75223 188 aaKnown RBP1.18□□□□□ -2.22
VPS29-205ENST00000548539 DHFRP00374 187 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 TAS2R41P59536 307 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 EIF5AL1Q6IS14 154 aaKnown RBP1.18□□□□□ -2.22
VPS29-205ENST00000548539 TMED4Q7Z7H5 227 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 SMIM20Q8N5G0 67 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 CANT1Q8WVQ1 401 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 HOPXQ9BPY8 73 aaPredicted RBP1.18□□□□□ -2.22
VPS29-205ENST00000548539 GINS3Q9BRX5 216 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 PBDC1Q9BVG4 233 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 GID8Q9NWU2 228 aa1.18□□□□□ -2.22
VPS29-205ENST00000548539 TCRBV4S1A1TA0A5B7 111 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 A8MWV9 139 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 B4DSR2 109 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 TMEM238C9JI98 176 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 CRHP06850 196 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 INSL3P51460 131 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 GNG3P63215 75 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 MYL5Q02045 173 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 LYG2Q86SG7 212 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 ST6GALNAC3Q8NDV1 305 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 ZHX1-C8orf76Q96EF9 292 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 GPER1Q99527 375 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 OR2J1Q9GZK6 312 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 LYRM2Q9NU23 88 aaPredicted RBP1.17□□□□□ -2.22
VPS29-205ENST00000548539 TAS2R7Q9NYW3 318 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 TAF1LQ8IZX4 1826 aa1.17□□□□□ -2.22
VPS29-205ENST00000548539 DOCK3Q8IZD9 2030 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 RIIAD1A6NNX1 92 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 MFSD11O43934 449 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 CD2P06729 351 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 HLA-EP13747 358 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 ZNF25P17030 456 aaPredicted RBP1.16□□□□□ -2.22
VPS29-205ENST00000548539 GNG10P50151 68 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 LYSMD1Q96S90 227 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 MRPL57Q9BQC6 102 aaKnown RBP1.16□□□□□ -2.22
VPS29-205ENST00000548539 LINC00467Q9BRT7 94 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 SH3BGRL3Q9H299 93 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 CHCHD2Q9Y6H1 151 aaPredicted RBP1.16□□□□□ -2.22
VPS29-205ENST00000548539 LY96Q9Y6Y9 160 aa1.16□□□□□ -2.22
VPS29-205ENST00000548539 PIAS1O75925 651 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 DNAL4O96015 105 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 CXCL1P09341 107 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 TMBIM6P55061 237 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 ROMO1P60602 79 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 POU6F1Q14863 301 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 SCGB2B2Q4G0G5 96 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 IFT20Q8IY31 132 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 OR5D14Q8NGL3 314 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 OR4K15Q8NH41 348 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 C4orf3Q8WVX3 66 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 BORCS5Q969J3 196 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 TEX37Q96LM6 180 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 ZNF714Q96N38 554 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 POPDC3Q9HBV1 291 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 UFC1Q9Y3C8 167 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 SBF1O95248 1867 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 RP1P56715 2156 aa1.15□□□□□ -2.23
VPS29-205ENST00000548539 EIF3AQ14152 1382 aaKnown RBP1.14□□□□□ -2.23
VPS29-205ENST00000548539 PRRC2BQ5JSZ5 2229 aaKnown RBP1.14□□□□□ -2.23
VPS29-205ENST00000548539 ODAMA1E959 279 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 TLCD2A6NGC4 264 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 APOA2P02652 100 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 ARPP19P56211 112 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 MSMO1Q15800 293 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 SPRNQ5BIV9 151 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 FAM74A1Q5RGS3 127 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 GDF5OSQ5U4N7 250 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 PPTC7Q8NI37 304 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 GPX7Q96SL4 187 aaPredicted RBP1.14□□□□□ -2.23
VPS29-205ENST00000548539 PRRT1Q99946 306 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 ARFGEF3Q5TH69 2177 aa1.14□□□□□ -2.23
VPS29-205ENST00000548539 INTS1Q8N201 2190 aaKnown RBP1.14□□□□□ -2.23
VPS29-205ENST00000548539 CEP164Q9UPV0 1460 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 K7ERJ3 54 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 M0R2N4 97 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 INE1O15225 51 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 CCL16O15467 120 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 TRGC2P03986 189 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 CSN2P05814 226 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 OGNP20774 298 aaKnown RBP1.13□□□□□ -2.23
VPS29-205ENST00000548539 GLRXP35754 106 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 MPV17LQ2QL34 196 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 C1orf134Q5TEV5 83 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 PATE2Q6UY27 113 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms