RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SIGLEC9Q9Y336 463 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 A0A1B0GUT8 65 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 NPPCP23582 126 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 BMI1P35226 326 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 IGFL4Q6B9Z1 124 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 UQCR10Q9UDW1 63 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 IGLV3-9A0A075B6K5 115 aa12.71□□□□□ -0.38
CUX1-211ENST00000546411 M0R3E3 92 aa12.71□□□□□ -0.38
CUX1-211ENST00000546411 CEACAM8P31997 349 aaPredicted RBP12.71□□□□□ -0.38
CUX1-211ENST00000546411 ARL6IP6Q8N6S5 226 aa12.71□□□□□ -0.38
CUX1-211ENST00000546411 TRGV3P03979 118 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 PCP4P48539 62 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 M0QZK8 103 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 CX3CL1P78423 397 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 WT1-ASQ06250 92 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 TMEM219Q86XT9 240 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 SZT2Q5T011 3432 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 THBDP07204 575 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 SEM1Q6ZVN7 128 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 NEU4Q8WWR8 484 aaPredicted RBP12.7□□□□□ -0.38
CUX1-211ENST00000546411 IGLV2-14P01704 120 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 IGFL3Q6UXB1 125 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 C5orf30Q96GV9 206 aa12.7□□□□□ -0.38
CUX1-211ENST00000546411 GRNP28799 593 aaKnown RBP12.69□□□□□ -0.38
CUX1-211ENST00000546411 RPL15P61313 204 aaKnown RBP12.69□□□□□ -0.38
CUX1-211ENST00000546411 ERASQ7Z444 233 aa12.69□□□□□ -0.38
CUX1-211ENST00000546411 BUB1B-PAK6H3BSN5 160 aa12.69□□□□□ -0.38
CUX1-211ENST00000546411 DLX6P56179 175 aa12.69□□□□□ -0.38
CUX1-211ENST00000546411 LCN12Q6JVE5 192 aa12.69□□□□□ -0.38
CUX1-211ENST00000546411 DPF1Q92782 380 aa12.69□□□□□ -0.38
CUX1-211ENST00000546411 PARD6GQ9BYG4 376 aaPredicted RBP12.69□□□□□ -0.38
CUX1-211ENST00000546411 NAV2Q8IVL1 2488 aa12.69□□□□□ -0.38
CUX1-211ENST00000546411 APOHP02749 345 aaPredicted RBP12.69□□□□□ -0.38
CUX1-211ENST00000546411 LOXP28300 417 aaPredicted RBP12.69□□□□□ -0.38
CUX1-211ENST00000546411 GATA4P43694 442 aa12.69□□□□□ -0.38
CUX1-211ENST00000546411 TM4SF20Q53R12 229 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 CDPF1Q6NVV7 123 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 RBPMS2Q6ZRY4 209 aaKnown RBP12.68□□□□□ -0.38
CUX1-211ENST00000546411 TMEM208Q9BTX3 173 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 USP9XQ93008 2570 aaPredicted RBP12.68□□□□□ -0.38
CUX1-211ENST00000546411 NAV3Q8IVL0 2385 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 IGHV2-5P01817 119 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 SFTPCP11686 197 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 CFHR2P36980 270 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 PDLIM4P50479 330 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 ATP5G2Q06055 141 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 TMEM70Q9BUB7 260 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 CHD3Q12873 2000 aaKnown RBP12.68□□□□□ -0.38
CUX1-211ENST00000546411 OR4C46A6NHA9 309 aa12.68□□□□□ -0.38
CUX1-211ENST00000546411 NPIPB5A8MRT5 1133 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 RHOGP84095 191 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 ACTL10Q5JWF8 245 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 UTF1Q5T230 341 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 C8orf46Q8TAG6 207 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 SLC25A39Q9BZJ4 359 aaPredicted RBP12.67□□□□□ -0.38
CUX1-211ENST00000546411 CDC42EP3Q9UKI2 254 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 GGTLC3B5MD39 225 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 ZNF324O75467 553 aaPredicted RBP12.67□□□□□ -0.38
CUX1-211ENST00000546411 FMC1Q96HJ9 113 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 NDUFAF3Q9BU61 184 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 PSG9Q00887 426 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 PSG8Q9UQ74 426 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 ZNF138P52744 262 aa12.67□□□□□ -0.38
CUX1-211ENST00000546411 TANC2Q9HCD6 1990 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 C9JCJ5 164 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 SIAH2O43255 324 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 OR10AG1Q8NH19 301 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 C7orf69Q9H7B7 122 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 HIST1H1AQ02539 215 aaPredicted RBP12.66□□□□□ -0.38
CUX1-211ENST00000546411 COTL1Q14019 142 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 TMEM155Q4W5P6 130 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 OR10J6PQ8NGY7 276 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 GNB1LQ9BYB4 327 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 NDUFA4L2Q9NRX3 87 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 FBLL1A6NHQ2 334 aaKnown RBP12.66□□□□□ -0.38
CUX1-211ENST00000546411 M0R381 172 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 BRD3OSQ6XYD6 125 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 ZNF664Q8N3J9 261 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 GLMPQ8WWB7 406 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 OTORQ9NRC9 128 aa12.66□□□□□ -0.38
CUX1-211ENST00000546411 F11RQ9Y624 299 aaKnown RBP12.66□□□□□ -0.38
CUX1-211ENST00000546411 LRP4O75096 1905 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 IGKV2-40A0A087WW87 121 aaPredicted RBP12.65□□□□□ -0.38
CUX1-211ENST00000546411 IGKV2D-40P01614 121 aaPredicted RBP12.65□□□□□ -0.38
CUX1-211ENST00000546411 Q8TAT8 98 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 MCRIP2Q9BUT9 160 aaKnown RBP12.65□□□□□ -0.38
CUX1-211ENST00000546411 SSBP2P81877 361 aaPredicted RBP12.65□□□□□ -0.38
CUX1-211ENST00000546411 SAPCD1Q5SSQ6 148 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 TPTE2P1Q5T6R2 138 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 OR5AN1Q8NGI8 311 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 EEF1AKMT3Q96AZ1 226 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 DNAH14Q0VDD8 3507 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 SORL1Q92673 2214 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 TCRAP04437 139 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 NUP35Q8NFH5 326 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 CCL19Q99731 98 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 PIMREGQ9BSJ6 248 aa12.65□□□□□ -0.38
CUX1-211ENST00000546411 SLC25A34Q6PIV7 304 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 VMO1Q7Z5L0 202 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 TSKUQ8WUA8 353 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms