RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 TMEM238C9JI98 176 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 IGHG4P01861 327 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 TRAPPC2P0DI81 140 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 TRAPPC2BP0DI82 140 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 FOXI1Q12951 378 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 FHL2Q14192 279 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 NSUN5P1Q3KNT7 163 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 COX19Q49B96 90 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 LYG2Q86SG7 212 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 NDUFA11Q86Y39 141 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 SLC35G3Q8N808 338 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 OR5B3Q8NH48 314 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 COQ8AQ8NI60 647 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 LHFPL5Q8TAF8 219 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 LSM10Q969L4 123 aaKnown RBP3.94□□□□□ -1.78
CLIP1-217ENST00000543205 QTRT1Q9BXR0 403 aaKnown RBP3.94□□□□□ -1.78
CLIP1-217ENST00000543205 ALX4Q9H161 411 aaPredicted RBP3.94□□□□□ -1.78
CLIP1-217ENST00000543205 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.94□□□□□ -1.78
CLIP1-217ENST00000543205 TMEM14BQ9NUH8 114 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 COA4Q9NYJ1 87 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 SHPKQ9UHJ6 478 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 DUXBA0A1W2PPF3 345 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 E7EUB6 86 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 H3BUA1 57 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 PPP1R2P9O14990 202 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 DHFRP00374 187 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 IFNA17P01571 189 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 TRGV3P03979 118 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 P0C879 139 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 DEFA4P12838 97 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 PSMB8P28062 276 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 HSPE1P61604 102 aaKnown RBP3.94□□□□□ -1.78
CLIP1-217ENST00000543205 DHRS2Q13268 280 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 IZUMO4Q1ZYL8 232 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 TCTEX1D4Q5JR98 221 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 PLET1Q6UQ28 207 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 LYZL2Q7Z4W2 148 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 HSD17B13Q7Z5P4 300 aaPredicted RBP3.94□□□□□ -1.78
CLIP1-217ENST00000543205 TTC9CQ8N5M4 171 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 DLX4Q92988 240 aaPredicted RBP3.94□□□□□ -1.78
CLIP1-217ENST00000543205 GPR146Q96CH1 333 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 ENY2Q9NPA8 101 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 NDUFA4L2Q9NRX3 87 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 CACNG5Q9UF02 275 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 CACFD1Q9UGQ2 172 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 ZNF257Q9Y2Q1 563 aa3.94□□□□□ -1.78
CLIP1-217ENST00000543205 A0A0G2JRQ6 117 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 A0A1B0GW64 132 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 C15orf62A8K5M9 175 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 CCSO14618 274 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 CYB5BO43169 146 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 SOX15O60248 233 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 DUS4LO95620 317 aaKnown RBP3.93□□□□□ -1.78
CLIP1-217ENST00000543205 IFNA21P01568 189 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 REG1AP05451 166 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 SULT1A3P0DMM9 295 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 SULT1A4P0DMN0 295 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 OR13C7P0DN81 318 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 GATA1P15976 413 aaPredicted RBP3.93□□□□□ -1.78
CLIP1-217ENST00000543205 HOXA1P49639 335 aaPredicted RBP3.93□□□□□ -1.78
CLIP1-217ENST00000543205 TPPP2P59282 170 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 SMCO1Q147U7 214 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 TIGITQ495A1 244 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 ZNF429Q86V71 674 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 KLHL30-AS1Q8NEE0 82 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 DUSP18Q8NEJ0 188 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 OR10W1Q8NGF6 305 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 OR1S2Q8NGQ3 325 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 OR1S1Q8NH92 325 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 RNF2Q99496 336 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 KLK15Q9H2R5 256 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 PLEKHA3Q9HB20 300 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 RCL1Q9Y2P8 373 aaKnown RBP3.93□□□□□ -1.78
CLIP1-217ENST00000543205 PAM16Q9Y3D7 125 aa3.93□□□□□ -1.78
CLIP1-217ENST00000543205 A0A0G2JLM5 398 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 A0A1B0GU03 582 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 IGLC7A0M8Q6 106 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 FAM231BA6NCW3 169 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 CEBPZOSA8MTT3 80 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 INMT-MINDY4F8WBC2 141 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 GOSR2O14653 212 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 IFNA5P01569 189 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 PRH1P02810 166 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 HIST1H1BP16401 226 aaKnown RBP3.92□□□□□ -1.78
CLIP1-217ENST00000543205 NKX2-5P52952 324 aaPredicted RBP3.92□□□□□ -1.78
CLIP1-217ENST00000543205 SPCS3P61009 180 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 ERHP84090 104 aaKnown RBP3.92□□□□□ -1.78
CLIP1-217ENST00000543205 PRCDQ00LT1 54 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 ATP5G2Q06055 141 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 SPINK9Q5DT21 86 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 NMSQ5H8A3 153 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 ZNF491Q8N8L2 437 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 ZNF431Q8TF32 576 aaPredicted RBP3.92□□□□□ -1.78
CLIP1-217ENST00000543205 USMG5Q96IX5 58 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 UBE2E2Q96LR5 201 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 SEC22CQ9BRL7 303 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 OVOL2Q9BRP0 275 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 FAM223BA6NKX1 122 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 PTTG1O95997 202 aa3.92□□□□□ -1.78
CLIP1-217ENST00000543205 IGHV3-11P01762 117 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms