RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DEFB130AP0DP74 79 aa12.44□□□□□ -0.42
CLSTN3-214ENST00000542663 KRTAP10-2P60368 255 aa12.44□□□□□ -0.42
CLSTN3-214ENST00000542663 FAAP20Q6NZ36 180 aa12.44□□□□□ -0.42
CLSTN3-214ENST00000542663 TMEM229BQ8NBD8 167 aa12.44□□□□□ -0.42
CLSTN3-214ENST00000542663 U3KQ87 197 aa12.44□□□□□ -0.42
CLSTN3-214ENST00000542663 FAM25AB3EWG3 89 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 FAM25CB3EWG5 89 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 FAM25GB3EWG6 89 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 F5H768 121 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 M0R2Z0 102 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 TNFAIP8O95379 198 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 RAB3DO95716 219 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 VBP1P61758 197 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 FCN2Q15485 313 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 OR8I2Q8N0Y5 310 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 KRTAP1-5Q9BYS1 174 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 C14orf166Q9Y224 244 aaKnown RBP12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 TMEM56-RWDD3S4R434 201 aa12.43□□□□□ -0.42
CLSTN3-214ENST00000542663 CRYM-AS1A6NIL9 109 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 SULT1A3P0DMM9 295 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 SULT1A4P0DMN0 295 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 AZU1P20160 251 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 CCL18P55774 89 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 TAS2R19P59542 299 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 OR2F1Q13607 317 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 SPINK13Q1W4C9 94 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 GPR107Q5VW38 600 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 STEAP1BQ6NZ63 245 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 LGI3Q8N145 548 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 OR11H7Q8NGC8 314 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 DTD1Q8TEA8 209 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 C16orf92Q96LL3 132 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 RBKSQ9H477 322 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 VCX3AQ9NNX9 186 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 PRR13Q9NZ81 148 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 HSPB7Q9UBY9 170 aa12.42□□□□□ -0.42
CLSTN3-214ENST00000542663 IGKV1OR2-108A0A075B7D4 117 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 A0A087WXM4 84 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 TSPOP30536 169 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 GPX4P36969 197 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 CNN1P51911 297 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 RNF141Q8WVD5 230 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 FUNDC2Q9BWH2 189 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 SLC25A32Q9H2D1 315 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 EXTL2Q9UBQ6 330 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 GPR132Q9UNW8 380 aa12.41□□□□□ -0.42
CLSTN3-214ENST00000542663 SNRPGP15A8MWD9 76 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 INSP01308 110 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 ATP5G1P05496 136 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 ATP5G3P48201 142 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 MEOX2P50222 304 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 SAMD13Q5VXD3 122 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 SSX7Q7RTT5 188 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 BAP18Q8IXM2 172 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 PPP1R14BQ96C90 147 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 CACFD1Q9UGQ2 172 aa12.4□□□□□ -0.42
CLSTN3-214ENST00000542663 SURF2Q15527 256 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-214ENST00000542663 IGFL4Q6B9Z1 124 aa12.39□□□□□ -0.43
CLSTN3-214ENST00000542663 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.39□□□□□ -0.43
CLSTN3-214ENST00000542663 SLC35E1Q96K37 410 aa12.39□□□□□ -0.43
CLSTN3-214ENST00000542663 TRGV9Q99603 122 aa12.39□□□□□ -0.43
CLSTN3-214ENST00000542663 Q9H8V8 135 aa12.39□□□□□ -0.43
CLSTN3-214ENST00000542663 CBY3A6NI87 242 aa12.38□□□□□ -0.43
CLSTN3-214ENST00000542663 GALR1P47211 349 aa12.38□□□□□ -0.43
CLSTN3-214ENST00000542663 MZT2AQ6P582 158 aa12.38□□□□□ -0.43
CLSTN3-214ENST00000542663 OR4C16Q8NGL9 310 aa12.38□□□□□ -0.43
CLSTN3-214ENST00000542663 IL22RA2Q969J5 263 aa12.38□□□□□ -0.43
CLSTN3-214ENST00000542663 RSG1Q9BU20 258 aa12.38□□□□□ -0.43
CLSTN3-214ENST00000542663 SLC25A22Q9H936 323 aa12.38□□□□□ -0.43
CLSTN3-214ENST00000542663 TRAV12-2A0A075B6T6 113 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 TRAV8-2A0A0B4J237 113 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 ZNF98A6NK75 572 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 GABARAPH6UMI1 98 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 GABARAPO95166 117 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 FABP1P07148 127 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 CCR6P51684 374 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 B2MP61769 119 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 SMCO1Q147U7 214 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 RNF182Q8N6D2 247 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 THAP8Q8NA92 274 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 FAT1Q14517 4588 aa12.37□□□□□ -0.43
CLSTN3-214ENST00000542663 DUSP14O95147 198 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-214ENST00000542663 BTF3P20290 206 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-214ENST00000542663 ATP5IP56385 69 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-214ENST00000542663 LYZL2Q7Z4W2 148 aa12.36□□□□□ -0.43
CLSTN3-214ENST00000542663 SLC25A39Q9BZJ4 359 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-214ENST00000542663 Q9H3A6 140 aa12.36□□□□□ -0.43
CLSTN3-214ENST00000542663 DMBT1Q9UGM3 2413 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-214ENST00000542663 SSBP1Q04837 148 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-214ENST00000542663 CLINT1Q14677 625 aa12.35□□□□□ -0.43
CLSTN3-214ENST00000542663 GPR141Q7Z602 305 aa12.35□□□□□ -0.43
CLSTN3-214ENST00000542663 UHRF2Q96PU4 802 aa12.35□□□□□ -0.43
CLSTN3-214ENST00000542663 MIXL1Q9H2W2 232 aa12.35□□□□□ -0.43
CLSTN3-214ENST00000542663 A0A0B4J2A0 478 aa12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 DISC1C4P0D8 188 aa12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 BOLA2-SMG1P6H3BVE0 249 aa12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 TTC32Q5I0X7 151 aa12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 TMEM182Q6ZP80 229 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 OR4D5Q8NGN0 318 aa12.34□□□□□ -0.43
CLSTN3-214ENST00000542663 C15orf40Q8WUR7 153 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms