RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ATP5L2Q7Z4Y8 100 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 TTC9CQ8N5M4 171 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 OR1B1Q8NGR6 318 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 TBX15Q96SF7 602 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 TXN2Q99757 166 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 RASL11BQ9BPW5 248 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 SIRPDQ9H106 197 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 C1RLQ9NZP8 487 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 SOX21Q9Y651 276 aaPredicted RBP7.83□□□□□ -1.16
SS18-205ENST00000542420 FAM231BA6NCW3 169 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 K7EIM0 57 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 CNIH1O95406 144 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 SCGB1D1O95968 90 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 AMY1AP04745 511 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 ARF6P62330 175 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 OR10J3Q5JRS4 329 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 VMO1Q7Z5L0 202 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 STPG4Q8N801 248 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 NUDT10Q8NFP7 164 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 THYN1Q9P016 225 aa7.83□□□□□ -1.16
SS18-205ENST00000542420 HSBP1L1C9JCN9 74 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 NUPR1O60356 82 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 PYYP10082 97 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 HOXB4P17483 251 aaPredicted RBP7.82□□□□□ -1.16
SS18-205ENST00000542420 UBE2G1P62253 170 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 RANP62826 216 aaKnown RBP7.82□□□□□ -1.16
SS18-205ENST00000542420 FXYD3Q14802 87 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 BAGE2Q86Y30 109 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 ITLN2Q8WWU7 325 aaPredicted RBP7.82□□□□□ -1.16
SS18-205ENST00000542420 GPR82Q96P67 336 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 ALKBH7Q9BT30 221 aaPredicted RBP7.82□□□□□ -1.16
SS18-205ENST00000542420 MRPL18Q9H0U6 180 aaKnown RBP7.82□□□□□ -1.16
SS18-205ENST00000542420 C7orf69Q9H7B7 122 aa7.82□□□□□ -1.16
SS18-205ENST00000542420 IGLV11-55A0A075B6I3 123 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 IGHV2-70DA0A0C4DH43 119 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 SERTM2A0A1B0GWG4 89 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 WI2-2373I1.2A0A1W2PRP0 233 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 FBLL1A6NHQ2 334 aaKnown RBP7.81□□□□□ -1.16
SS18-205ENST00000542420 TMEM238C9JI98 176 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 H3BRN7 92 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 ORM2P19652 201 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 ADMP35318 185 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 UBE2E1P51965 193 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 PDE6HQ13956 83 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 LDLRAD2Q5SZI1 272 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 SHANK2-AS3Q9BTD1 123 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 MLST8Q9BVC4 326 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 SLC25A39Q9BZJ4 359 aaPredicted RBP7.81□□□□□ -1.16
SS18-205ENST00000542420 GFRA4Q9GZZ7 299 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 DSPP15924 2871 aaKnown RBP7.81□□□□□ -1.16
SS18-205ENST00000542420 SLC17A3O00476 420 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 SLC25A5P05141 298 aaKnown RBP7.81□□□□□ -1.16
SS18-205ENST00000542420 PSG1P11464 419 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 UBE2V1Q13404 147 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 BATFQ16520 125 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 OR4B1Q8NGF8 309 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 ARPC1AQ92747 370 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 ATP6V0BQ99437 205 aa7.81□□□□□ -1.16
SS18-205ENST00000542420 OVOL3O00110 214 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 FCN1O00602 326 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 LTAP01374 205 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 IGKV1-17P01599 117 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 HLA-DRB1P01911 266 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 MFAP4P55083 255 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 CLEC12BQ2HXU8 276 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 TMEM136Q6ZRR5 245 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 BPIFA4PQ86YQ2 179 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 OR8I2Q8N0Y5 310 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 TSKUQ8WUA8 353 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 NAT8BQ9UHF3 227 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 PLXNB1O43157 2135 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 A0A1B0GUS0 222 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 PGPA6NDG6 321 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 TCRAP04437 139 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 CRISP2P16562 243 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 Q6ZWC4 215 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 TMEM256Q8N2U0 113 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 VN1R17PQ8TDU5 208 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 CSTL1Q9H114 145 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 Q9H3A6 140 aa7.8□□□□□ -1.16
SS18-205ENST00000542420 SNURFLB1AK76 121 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 FAM106CPP0CH98 169 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 MGST1P10620 155 aaKnown RBP7.79□□□□□ -1.16
SS18-205ENST00000542420 CD33P20138 364 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 TPPP2P59282 170 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 SMIM15Q7Z3B0 74 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 TMEM75Q8N9X5 138 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 OR4F17Q8NGA8 305 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 PRSS22Q9GZN4 317 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 RNASE7Q9H1E1 156 aaKnown RBP7.79□□□□□ -1.16
SS18-205ENST00000542420 MGAQ8IWI9 3026 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 M0QZ24 198 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 LYZP61626 148 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 LHFPL4Q7Z7J7 247 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 CMTM2Q8TAZ6 248 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 NUDT11Q96G61 164 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 MS4A10Q96PG2 267 aa7.79□□□□□ -1.16
SS18-205ENST00000542420 ZNF331Q9NQX6 463 aaPredicted RBP7.79□□□□□ -1.16
SS18-205ENST00000542420 C19orf71A6NCJ1 209 aa7.78□□□□□ -1.16
SS18-205ENST00000542420 ZNF705FA8MVS1 300 aaPredicted RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms