RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 USF2Q15853 346 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-216ENST00000541410 C5orf56Q8N8D9 126 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 OR1L6Q8NGR2 347 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 FRZBQ92765 325 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 RNF125Q96EQ8 232 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 C17orf77Q96MU5 243 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 ARL2-SNX15V9GYD0 113 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 C5orf52A6NGY3 159 aa11.37□□□□□ -0.59
CLIP1-216ENST00000541410 SLC25A5P05141 298 aaKnown RBP11.37□□□□□ -0.59
CLIP1-216ENST00000541410 FCGR2BP31994 310 aaPredicted RBP11.37□□□□□ -0.59
CLIP1-216ENST00000541410 NDUFA6P56556 154 aa11.37□□□□□ -0.59
CLIP1-216ENST00000541410 ERVFC1-1P60608 527 aa11.37□□□□□ -0.59
CLIP1-216ENST00000541410 OR10G8Q8NGN5 311 aa11.37□□□□□ -0.59
CLIP1-216ENST00000541410 ISLRO14498 428 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BKO60814 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 AMY1AP04745 511 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BJP06899 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BOP23527 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BBP33778 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BDP58876 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BCP62807 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST2H2BEQ16778 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 C15orf32Q32M92 178 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BHQ93079 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BNQ99877 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST1H2BMQ99879 126 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 CHRDL1Q9BU40 450 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 ZNF586Q9NXT0 402 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 MRPL27Q9P0M9 148 aaKnown RBP11.36□□□□□ -0.59
CLIP1-216ENST00000541410 C9JCJ5 164 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 H3BUX3 64 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 TOMM40O96008 361 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 HIST2H2BCQ6DN03 193 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 EXOC3-AS1Q8N2X6 119 aa11.36□□□□□ -0.59
CLIP1-216ENST00000541410 B4DSR2 109 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 PEX7O00628 323 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 IGLV2-8P01709 118 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 TRGC1P0CF51 173 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 RHOGP84095 191 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 Q9H3A6 140 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 THYN1Q9P016 225 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 PPP5D1E7EU14 171 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 GPR183P32249 361 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 STXBP6Q8NFX7 210 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 IGF2BP2-AS1Q96M15 143 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 TENM4Q6N022 2769 aa11.35□□□□□ -0.59
CLIP1-216ENST00000541410 ZNF320A2RRD8 509 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 RNF223E7ERA6 249 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 ADMP35318 185 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 MYCNOSP40205 109 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 ASCL2Q99929 193 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 ZNF469Q96JG9 3925 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-216ENST00000541410 AP4M1O00189 453 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 SPINK4O60575 86 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 CA1P00915 261 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-216ENST00000541410 CTSGP08311 255 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 CNN1P51911 297 aaKnown RBP11.34□□□□□ -0.59
CLIP1-216ENST00000541410 PDZD11Q5EBL8 140 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 GFI1BQ5VTD9 330 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 PRR27Q6MZM9 219 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 KCNIP4Q6PIL6 250 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 FAM110DQ8TAY7 271 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-216ENST00000541410 PYGO2Q9BRQ0 406 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 MOB4Q9Y3A3 225 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 CR1P17927 2039 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 APCP25054 2843 aa11.34□□□□□ -0.59
CLIP1-216ENST00000541410 GGCTO75223 188 aaKnown RBP11.33□□□□□ -0.6
CLIP1-216ENST00000541410 TGFAP01135 160 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 FRMD6-AS1P0C7T7 363 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 CD99P14209 185 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 SRP14P37108 136 aaKnown RBP11.33□□□□□ -0.6
CLIP1-216ENST00000541410 SLC35B1P78383 322 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 Q6ZS46 218 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 Q71RC1 249 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-216ENST00000541410 SHANK2-AS3Q9BTD1 123 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 GNB4Q9HAV0 340 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 EPDR1Q9UM22 224 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 PRRC2AP48634 2157 aaKnown RBP11.33□□□□□ -0.6
CLIP1-216ENST00000541410 TRAV8-1A0A0A6YYK1 113 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 WI2-2373I1.2A0A1W2PRP0 233 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 H3BRN7 92 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 CLEC3BP05452 202 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 FABP1P07148 127 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 TCL1AP56279 114 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 NOL4LQ96MY1 436 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-216ENST00000541410 SRD5A3Q9H8P0 318 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 SERTAD4Q9NUC0 356 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 TEX15Q9BXT5 2789 aa11.33□□□□□ -0.6
CLIP1-216ENST00000541410 TLN2Q9Y4G6 2542 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 ZNF98A6NK75 572 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 PHOX2AO14813 284 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 PPP1R2P9O14990 202 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 BLCAPP62952 87 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 CLEC19AQ6UXS0 136 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 BAGE2Q86Y30 109 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 CDC42EP3Q9UKI2 254 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 V9GYV3 84 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 TRAV30A0A087WSZ9 112 aa11.32□□□□□ -0.6
CLIP1-216ENST00000541410 UBE2CO00762 179 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms