RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CACNA1BQ00975 2339 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 TIMM23O14925 209 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 HIST1H4AP62805 103 aaKnown RBP8.81□□□□□ -1
CLIP1-209ENST00000537178 ZNF837Q96EG3 531 aaPredicted RBP8.81□□□□□ -1
CLIP1-209ENST00000537178 HEATR1Q9H583 2144 aaKnown RBP8.81□□□□□ -1
CLIP1-209ENST00000537178 CD55P08174 381 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 CELA3BP08861 270 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 SIGLEC15Q6ZMC9 328 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 NOTCH4Q99466 2003 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 TET1Q8NFU7 2136 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.81□□□□□ -1
CLIP1-209ENST00000537178 THBDP07204 575 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 ZNF876PQ49A33 203 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 OVOL2Q9BRP0 275 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 ROS1P08922 2347 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 FGF16O43320 207 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 TNFSF13O75888 250 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 CD33P20138 364 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 C3orf36Q3SXR2 165 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 DEPPQ9NTK1 212 aa8.81□□□□□ -1
CLIP1-209ENST00000537178 TP53BP1Q12888 1972 aaPredicted RBP8.81□□□□□ -1
CLIP1-209ENST00000537178 HIST1H2BLQ99880 126 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 CHD9Q3L8U1 2897 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 IGHV3-64A0A075B6Q5 118 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 DNAJC30Q96LL9 226 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 TRAV41A0A0B4J266 112 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 RAMP3O60896 148 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 CD24P25063 80 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 MPZP25189 248 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 TIMP3P35625 211 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 RIPPLY3P57055 190 aa8.8□□□□□ -1
CLIP1-209ENST00000537178 MRPL14Q6P1L8 145 aaKnown RBP8.8□□□□□ -1
CLIP1-209ENST00000537178 A0A0G2JMM0 328 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 A0A1W2PPB8 328 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 KIR3DP1A8MWS1 328 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 VWC2LB2RUY7 222 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 UBE2CO00762 179 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 SRSF3P84103 164 aaKnown RBP8.79□□□□□ -1
CLIP1-209ENST00000537178 RASL11AQ6T310 242 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 HEPN1Q6WQI6 88 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 C1QL4Q86Z23 238 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 UBE2DNLQ8IWF7 75 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 RCHY1Q96PM5 261 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 TDRD6O60522 2096 aaKnown RBP8.79□□□□□ -1
CLIP1-209ENST00000537178 H0YIZ8 118 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 LHX2P50458 406 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 LY6G6FQ5SQ64 297 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 TEX43Q6ZNM6 134 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 BCL6BQ8N143 479 aaPredicted RBP8.79□□□□□ -1
CLIP1-209ENST00000537178 SLC25A28Q96A46 364 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 RPUSD1Q9UJJ7 312 aaKnown RBP8.79□□□□□ -1
CLIP1-209ENST00000537178 SSBP2P81877 361 aaPredicted RBP8.79□□□□□ -1
CLIP1-209ENST00000537178 ZNF48Q96MX3 618 aaPredicted RBP8.79□□□□□ -1
CLIP1-209ENST00000537178 ARFGEF3Q5TH69 2177 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 OCIAD2Q56VL3 154 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 SPSB3Q6PJ21 355 aa8.79□□□□□ -1
CLIP1-209ENST00000537178 MYOFQ9NZM1 2061 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 TRAV8-1A0A0A6YYK1 113 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 IGKV1-9A0A0C4DH69 117 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 VCYO14598 125 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 C2orf82Q6UX34 121 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 C9orf139Q6ZV77 190 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 ANAPC10Q9UM13 185 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 IGLV3-12A0A075B6K2 115 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 OOSP1A8MZH6 123 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 TMEM155Q4W5P6 130 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 C6orf226Q5I0X4 101 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 TREML4Q6UXN2 200 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 SCN5AQ14524 2016 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 TGFBR3LH3BV60 316 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 PRTN3P24158 256 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 PTPRSQ13332 1948 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 DSCR9P59020 149 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 GGTLC1Q9BX51 225 aa8.78□□□□□ -1
CLIP1-209ENST00000537178 RIF1Q5UIP0 2472 aaKnown RBP8.78□□□□□ -1
CLIP1-209ENST00000537178 TRAV1-1A0A0B4J248 108 aa8.77□□□□□ -1
CLIP1-209ENST00000537178 TRAV40A0A0B4J280 105 aa8.77□□□□□ -1
CLIP1-209ENST00000537178 PMS2P5A8MQ11 134 aa8.77□□□□□ -1
CLIP1-209ENST00000537178 ZNF138P52744 262 aa8.77□□□□□ -1
CLIP1-209ENST00000537178 KLF17Q5JT82 389 aaPredicted RBP8.77□□□□□ -1
CLIP1-209ENST00000537178 RNF5Q99942 180 aa8.77□□□□□ -1
CLIP1-209ENST00000537178 RALGAPA1Q6GYQ0 2036 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 LOC102723996A0A087X1L8 192 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 A0A1B0GWJ7 208 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 E9PLN8 166 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 DLX4Q92988 240 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-209ENST00000537178 MBNL3Q9NUK0 354 aaKnown RBP8.77□□□□□ -1.01
CLIP1-209ENST00000537178 D6R8Y8 96 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 LILRA1O75019 489 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 C15orf32Q32M92 178 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 RPRMLQ8N4K4 120 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 CACNA1HO95180 2353 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 SPTBN5Q9NRC6 3674 aaKnown RBP8.77□□□□□ -1.01
CLIP1-209ENST00000537178 INS-IGF2F8WCM5 200 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 INSP01308 110 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 HIST3H2BBQ8N257 126 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 LTBP2Q14767 1821 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 IGLV3-32A0A0A0MS00 114 aa8.77□□□□□ -1.01
CLIP1-209ENST00000537178 SRRM4A7MD48 611 aaKnown RBP8.77□□□□□ -1.01
CLIP1-209ENST00000537178 ITGB1BP1O14713 200 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms