RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 MORN3Q6PF18 240 aaPredicted RBP4.69□□□□□ -1.66
CD44-225ENST00000527326 PCP2Q8IVA1 136 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 C3orf22Q8N5N4 141 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 OR4C13Q8NGP0 309 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 BAALCQ8WXS3 180 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 TMEM190Q8WZ59 177 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 BORCS8Q96FH0 119 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 LYZL4Q96KX0 146 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 FOXB1Q99853 325 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 C21orf62Q9NYP8 219 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 PROCRQ9UNN8 238 aa4.69□□□□□ -1.66
CD44-225ENST00000527326 HEATR5BQ9P2D3 2071 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 TRBV25-1A0A075B6N4 114 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 TMED7-TICAM2A0A0A6YYA0 188 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 A0A1W2PQD3 144 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 A0A1W2PQF6 199 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 M0R2P5 195 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 UQCRQO14949 82 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 HOXA3O43365 443 aaPredicted RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 APOHP02749 345 aaPredicted RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 PLA2G1BP04054 148 aaKnown RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 PLA2G5P39877 138 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 CACNG7P62955 275 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 C1orf61Q13536 156 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 IZUMO4Q1ZYL8 232 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 PIGYQ3MUY2 71 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 KLF17Q5JT82 389 aaPredicted RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 PCSK4Q6UW60 755 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 Q6ZPA2 131 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 Q6ZR03 302 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 CIARTQ8N365 385 aaPredicted RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 C10orf126Q8N4M7 172 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 GATD1Q8NB37 220 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 TMEM116Q8NCL8 245 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 OR8A1Q8NGG7 326 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 PRSS3P2Q8NHM4 247 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 SNRNP40Q96DI7 357 aaKnown RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 COX14Q96I36 57 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 MCRIP2Q9BUT9 160 aaKnown RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 RPP21Q9H633 154 aaKnown RBP4.68□□□□□ -1.66
CD44-225ENST00000527326 PLEKHA3Q9HB20 300 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 ZNF355PQ9NSJ1 428 aa4.68□□□□□ -1.66
CD44-225ENST00000527326 MYO9BQ13459 2157 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 IGKV1D-43A0A0B4J1Z2 117 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 TRAV8-2A0A0B4J237 113 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 TRAV8-4A0A0B4J246 113 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 TRBV7-7A0A0K0K1E9 115 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 LOC107984640A0A0U1RRK4 108 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 MS4A18H0YCH9 400 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 RS1O15537 224 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 SPRY1O43609 319 aaPredicted RBP4.67□□□□□ -1.66
CD44-225ENST00000527326 WISP2O76076 250 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 HBDP02042 147 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 SCTP09683 121 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 CECR9P0C854 216 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 P0C879 139 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 DEFA4P12838 97 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 PSMB2P49721 201 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 SEC61GP60059 68 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 HERVK_113P63121 156 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 MS4A18Q3C1V0 323 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 FOXL2NBQ6ZUU3 175 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 LINC00596Q86U02 117 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 GGNQ86UU5 652 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 SLC22A18ASQ8N1D0 253 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 FGFRL1Q8N441 504 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 ANKRD29Q8N6D5 301 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 WDR31Q8NA23 367 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 FLYWCH2Q96CP2 140 aaKnown RBP4.67□□□□□ -1.66
CD44-225ENST00000527326 LINC00526Q96FQ7 95 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 RITA1Q96K30 269 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 LINC01600Q96MT4 127 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 MGST2Q99735 147 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 SPRY4Q9C004 299 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 IMUPQ9GZP8 106 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 TMEM160Q9NX00 188 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 ZNF492Q9P255 531 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 PRO0628Q9UI54 55 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 PILRAQ9UKJ1 303 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 FZR1Q9UM11 496 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 DOCK11Q5JSL3 2073 aa4.67□□□□□ -1.66
CD44-225ENST00000527326 TCF20Q9UGU0 1960 aaKnown RBP4.66□□□□□ -1.66
CD44-225ENST00000527326 TRAV2A0A0B4J234 112 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 MYMXA0A1B0GTQ4 84 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 C16orf97H3BN30 126 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 ZG16O60844 167 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 NPYP01303 97 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 IGLC6P0CF74 106 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 MALP21145 153 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 FBXW4P57775 412 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 KRTAP10-2P60368 255 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 UBE2D3P61077 147 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 PPP1CAP62136 330 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 UBE2D2P62837 147 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 IGLV3-21P80748 117 aaPredicted RBP4.66□□□□□ -1.66
CD44-225ENST00000527326 TMEM52BQ4KMG9 183 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 MIC13Q5XKP0 118 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 PDPNQ86YL7 162 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 ABHD12Q8N2K0 398 aa4.66□□□□□ -1.66
CD44-225ENST00000527326 C15orf53Q8NAA6 179 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms