RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 SEPSECSQ9HD40 501 aaKnown RBP15.3■□□□□ 0.04
VPS28-203ENST00000524521 RCL1Q9Y2P8 373 aaKnown RBP15.3■□□□□ 0.04
VPS28-203ENST00000524521 TSC22D2O75157 780 aa15.29■□□□□ 0.04
VPS28-203ENST00000524521 DLK1P80370 383 aa15.29■□□□□ 0.04
VPS28-203ENST00000524521 OR10P1Q8NGE3 313 aa15.29■□□□□ 0.04
VPS28-203ENST00000524521 WDR12Q9GZL7 423 aaKnown RBP15.29■□□□□ 0.04
VPS28-203ENST00000524521 PTTG2Q9NZH5 202 aa15.29■□□□□ 0.04
VPS28-203ENST00000524521 TENM2Q9NT68 2774 aa15.29■□□□□ 0.04
VPS28-203ENST00000524521 LCE6AA0A183 80 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 C7orf66A4D0T2 115 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 L7N2F9 121 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 IL5P05113 134 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 SPP1P10451 314 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 VAMP2P63027 116 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 PMS2P11Q13670 270 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 MORN3Q6PF18 240 aaPredicted RBP15.28■□□□□ 0.04
VPS28-203ENST00000524521 CYP2G1PQ6ZSU1 146 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 TMEM217Q8N7C4 229 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 OR1B1Q8NGR6 318 aa15.28■□□□□ 0.04
VPS28-203ENST00000524521 LSM5Q9Y4Y9 91 aaKnown RBP15.28■□□□□ 0.04
VPS28-203ENST00000524521 CXorf65A6NEN9 183 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 UPK1BO75841 260 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 ID1P41134 155 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 GSG1LQ6UXU4 331 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 LINC00052Q96N35 136 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 TMEM147Q9BVK8 224 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 SLC25A22Q9H936 323 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 NPVFQ9HCQ7 196 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 MGAT4CQ9UBM8 478 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 SLC45A2Q9UMX9 530 aa15.27■□□□□ 0.04
VPS28-203ENST00000524521 CSMD3Q7Z407 3707 aa15.27■□□□□ 0.03
VPS28-203ENST00000524521 ZNF98A6NK75 572 aa15.26■□□□□ 0.03
VPS28-203ENST00000524521 GIG44P09565 113 aaPredicted RBP15.26■□□□□ 0.03
VPS28-203ENST00000524521 TMEM41BQ5BJD5 291 aa15.26■□□□□ 0.03
VPS28-203ENST00000524521 C2orf50Q96LR7 162 aa15.26■□□□□ 0.03
VPS28-203ENST00000524521 DOK5Q9P104 306 aa15.26■□□□□ 0.03
VPS28-203ENST00000524521 S100A7P31151 101 aa15.25■□□□□ 0.03
VPS28-203ENST00000524521 ARL16Q0P5N6 197 aa15.25■□□□□ 0.03
VPS28-203ENST00000524521 ENKURQ8TC29 256 aa15.25■□□□□ 0.03
VPS28-203ENST00000524521 SLC25A32Q9H2D1 315 aa15.25■□□□□ 0.03
VPS28-203ENST00000524521 FNDC10F2Z333 226 aa15.24■□□□□ 0.03
VPS28-203ENST00000524521 K7EPK0 472 aa15.24■□□□□ 0.03
VPS28-203ENST00000524521 ATF4P18848 351 aaPredicted RBP15.24■□□□□ 0.03
VPS28-203ENST00000524521 C4BPBP20851 252 aa15.24■□□□□ 0.03
VPS28-203ENST00000524521 GALR1P47211 349 aa15.24■□□□□ 0.03
VPS28-203ENST00000524521 BCAP31P51572 246 aa15.24■□□□□ 0.03
VPS28-203ENST00000524521 SELENOTP62341 195 aa15.24■□□□□ 0.03
VPS28-203ENST00000524521 RSG1Q9BU20 258 aa15.24■□□□□ 0.03
VPS28-203ENST00000524521 H3BMM0 161 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 LINC00869P0C866 280 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 PSMB3P49720 205 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 DEFB1P60022 68 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 RAP2BP61225 183 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 NUTF2P61970 127 aaKnown RBP15.23■□□□□ 0.03
VPS28-203ENST00000524521 IFITM3Q01628 133 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 TEPPQ6URK8 271 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 CLEC5AQ9NY25 188 aa15.23■□□□□ 0.03
VPS28-203ENST00000524521 SOCS3O14543 225 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 DEFB4AO15263 64 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 HYPMO75409 117 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 DEDDO75618 318 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 OR5G3P0C626 314 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 CAV2P51636 162 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 GGACTQ9BVM4 153 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 SLC25A39Q9BZJ4 359 aaPredicted RBP15.22■□□□□ 0.03
VPS28-203ENST00000524521 GPN1Q9HCN4 374 aaPredicted RBP15.22■□□□□ 0.03
VPS28-203ENST00000524521 HIGD1AQ9Y241 93 aa15.22■□□□□ 0.03
VPS28-203ENST00000524521 ISLRO14498 428 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 JTBO76095 146 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 HLA-DRB4P13762 266 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 PVALBP20472 110 aaPredicted RBP15.21■□□□□ 0.03
VPS28-203ENST00000524521 MEOX2P50222 304 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 S100A10P60903 97 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 SLC38A11Q08AI6 406 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 GDF5OSQ5U4N7 250 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 C16orf92Q96LL3 132 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 GPR82Q96P67 336 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 SCRT1Q9BWW7 348 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 C11orf68Q9H3H3 251 aaKnown RBP15.21■□□□□ 0.03
VPS28-203ENST00000524521 HLA-DRB4X5D2U9 266 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 STARD9Q9P2P6 4700 aa15.21■□□□□ 0.03
VPS28-203ENST00000524521 NUPR2A6NF83 97 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 FAM24AA6NFZ4 105 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 H3BRN7 92 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 GOSR2O14653 212 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 IGKV3-20P01619 116 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 PLP1P60201 277 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 RAB32Q13637 225 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 SAMD13Q5VXD3 122 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 SHANK2-AS3Q9BTD1 123 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 ARL6Q9H0F7 186 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 SAV1Q9H4B6 383 aaPredicted RBP15.2■□□□□ 0.02
VPS28-203ENST00000524521 C11orf1Q9H5F2 150 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 XCL2Q9UBD3 114 aa15.2■□□□□ 0.02
VPS28-203ENST00000524521 CST7O76096 145 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 IL15RAQ13261 267 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 CEMP1Q6PRD7 247 aaPredicted RBP15.19■□□□□ 0.02
VPS28-203ENST00000524521 FOXI2Q6ZQN5 318 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 NRARPQ7Z6K4 114 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 CSNK1G2-AS1Q8NCQ2 148 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms