RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 POLEQ07864 2286 aa1□□□□□ -2.25
HMGB1P28-201ENST00000507778 DLG5Q8TDM6 1919 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 TECTAO75443 2155 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 TCRBV4S1A1TA0A5B7 111 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 G3V2T6 193 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 M0R378 163 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 ATG12O94817 140 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 NDUFC2O95298 119 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 LY96Q9Y6Y9 160 aa0.99□□□□□ -2.25
HMGB1P28-201ENST00000507778 ALPK2Q86TB3 2170 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 TNS3Q68CZ2 1445 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 CACNA1BQ00975 2339 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 CAMSAP1Q5T5Y3 1602 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 ANAPC1Q9H1A4 1944 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 TMEM256-PLSCR3K7ERE1 68 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 ZNF25P17030 456 aaPredicted RBP0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 BASP1P80723 227 aaKnown RBP0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 C2orf82Q6UX34 121 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 C4orf22Q6V702 233 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 PATE1Q8WXA2 126 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 BORCS5Q969J3 196 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 TEX37Q96LM6 180 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 PSTPIP2Q9H939 334 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 MED29Q9NX70 200 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 CHCHD2Q9Y6H1 151 aaPredicted RBP0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 ROS1P08922 2347 aa0.98□□□□□ -2.25
HMGB1P28-201ENST00000507778 TRBV6-4A0A1B0GX49 114 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 AIPO00170 330 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 CCL16O15467 120 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 DNAL4O96015 105 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 DYNLT3P51808 116 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 ROMO1P60602 79 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 PRB3Q04118 309 aaPredicted RBP0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 EIF5AL1Q6IS14 154 aaKnown RBP0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 OR5D14Q8NGL3 314 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 TP53RKQ96S44 253 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 NPCDR1Q9BY65 106 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 STOML2Q9UJZ1 356 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 PRNDQ9UKY0 176 aa0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 ARHGEF28Q8N1W1 1705 aaKnown RBP0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 KDM6AO15550 1401 aaPredicted RBP0.97□□□□□ -2.25
HMGB1P28-201ENST00000507778 DUXBA0A1W2PPF3 345 aa0.96□□□□□ -2.26
HMGB1P28-201ENST00000507778 HLA-EP13747 358 aa0.96□□□□□ -2.26
HMGB1P28-201ENST00000507778 NFYBP25208 207 aa0.96□□□□□ -2.26
HMGB1P28-201ENST00000507778 SCGB2B2Q4G0G5 96 aa0.96□□□□□ -2.26
HMGB1P28-201ENST00000507778 SPRNQ5BIV9 151 aa0.96□□□□□ -2.26
HMGB1P28-201ENST00000507778 TAS2R7Q9NYW3 318 aa0.96□□□□□ -2.26
HMGB1P28-201ENST00000507778 PCTPQ9UKL6 214 aa0.96□□□□□ -2.26
HMGB1P28-201ENST00000507778 ARHGEF11O15085 1522 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 H7C1C5 153 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 CCL25O15444 150 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 DSCR4P56555 118 aaPredicted RBP0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 LCN6P62502 163 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 GNG5P63218 68 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 RPL19P84098 196 aaKnown RBP0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 AKR1C8PQ5T2L2 129 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 EXOC3-AS1Q8N2X6 119 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 AMELYQ99218 206 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 OR2J1Q9GZK6 312 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 LYRM2Q9NU23 88 aaPredicted RBP0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 ORMDL1Q9P0S3 153 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 SBF1O95248 1867 aa0.95□□□□□ -2.26
HMGB1P28-201ENST00000507778 EXPH5Q8NEV8 1989 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 PLXND1Q9Y4D7 1925 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 TRAV10A0A0B4J240 114 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 TLCD2A6NGC4 264 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 E7EUB6 86 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 C17orf112F2Z3M2 114 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 CD2P06729 351 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 PHBP35232 272 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 ZNF833PQ6ZTB9 187 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 IFT20Q8IY31 132 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 SH3BGRL3Q9H299 93 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 TMEM14CQ9P0S9 112 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 SSR3Q9UNL2 185 aa0.94□□□□□ -2.26
HMGB1P28-201ENST00000507778 ZNF106Q9H2Y7 1883 aaKnown RBP0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 IGHV1-58A0A0C4DH39 117 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 RIIAD1A6NNX1 92 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 ERC2-IT1O76042 136 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 IFNA1P01562 189 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 APOA2P02652 100 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 CRHP06850 196 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 LINC00322Q6ZN03 302 aaPredicted RBP0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 TMED4Q7Z7H5 227 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 OR13C6PQ8NH95 151 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 CDC26Q8NHZ8 85 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 LINC00052Q96N35 136 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 PAIP2Q9BPZ3 127 aaKnown RBP0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 GINS3Q9BRX5 216 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 PBDC1Q9BVG4 233 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 POPDC3Q9HBV1 291 aa0.93□□□□□ -2.26
HMGB1P28-201ENST00000507778 TAF1LQ8IZX4 1826 aa0.92□□□□□ -2.26
HMGB1P28-201ENST00000507778 TNRC6BQ9UPQ9 1833 aaKnown RBP0.92□□□□□ -2.26
HMGB1P28-201ENST00000507778 UHRF1BP1Q6BDS2 1440 aa0.92□□□□□ -2.26
HMGB1P28-201ENST00000507778 B4DSR2 109 aa0.92□□□□□ -2.26
HMGB1P28-201ENST00000507778 M0R233 179 aa0.92□□□□□ -2.26
HMGB1P28-201ENST00000507778 NUPR1O60356 82 aa0.92□□□□□ -2.26
HMGB1P28-201ENST00000507778 IFNA14P01570 189 aa0.92□□□□□ -2.26
HMGB1P28-201ENST00000507778 OR10J4P0C629 311 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms