RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 RNF144BQ7Z419 303 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 LYPD6Q86Y78 171 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 ZNF695Q8IW36 515 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 FAM58AQ8N1B3 248 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 OR10W1Q8NGF6 305 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 OR51T1Q8NGJ9 327 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 OR4P4Q8NGL7 312 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 MRPL30Q8TCC3 161 aaKnown RBP3.94□□□□□ -1.78
CSMD3-208ENST00000497026 LHX4Q969G2 390 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 SPSB1Q96BD6 273 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 ARHGAP5-AS1Q96IT6 56 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 C1orf147Q96MC9 270 aaPredicted RBP3.94□□□□□ -1.78
CSMD3-208ENST00000497026 ZNF488Q96MN9 340 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 GAFA1Q96PS6 74 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 CCL13Q99616 98 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 NICN1Q9BSH3 213 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 SIRPDQ9H106 197 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 HES4Q9HCC6 221 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 CLEC5AQ9NY25 188 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 ZNF581Q9P0T4 197 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 TIMM9Q9Y5J7 89 aa3.94□□□□□ -1.78
CSMD3-208ENST00000497026 IGHV3OR16-10A0A075B7F0 116 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 TRAV9-2A0A087WT02 112 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 CTXND1A0A1B0GTU2 59 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 A6NDN8 102 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 G3V4G9 280 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 H0Y8G0 127 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 DEGS1O15121 323 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 SOCS1O15524 211 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 ENSAO43768 121 aaKnown RBP3.93□□□□□ -1.78
CSMD3-208ENST00000497026 HLA-DRB1P01911 266 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 PSG2P11465 335 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 PMCHP20382 165 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 OMGP23515 440 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 CEACAM3P40198 252 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 CEBPDP49716 269 aaPredicted RBP3.93□□□□□ -1.78
CSMD3-208ENST00000497026 ERVK11-1P61568 191 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 BRD3OSQ6XYD6 125 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 ACP7Q6ZNF0 438 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 C9orf139Q6ZV77 190 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 LYZL2Q7Z4W2 148 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 FAM89BQ8N5H3 189 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 DEFB125Q8N687 156 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 TEX29Q8N6K0 151 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 CD177Q8N6Q3 437 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.93□□□□□ -1.78
CSMD3-208ENST00000497026 FER1L6-AS1Q8NA97 138 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 ZNRF1Q8ND25 227 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 LY6G5BQ8NDX9 201 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 OR5A1Q8NGJ0 315 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 OR52M1Q8NGK5 317 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 OR4F5Q8NH21 305 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 C8orf46Q8TAG6 207 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 TMEM158Q8WZ71 300 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 C10orf35Q96D05 121 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 URB1-AS1Q96HZ7 61 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 OR4F4Q96R69 305 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 RAB40CQ96S21 281 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 PMCHL2Q9BQD1 86 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 TXNDC17Q9BRA2 123 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 DCTN5Q9BTE1 182 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 RSG1Q9BU20 258 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 C19orf24Q9BVV8 132 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 PECRQ9BY49 303 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 C11orf1Q9H5F2 150 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 ST20Q9HBF5 79 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 SLC39A9Q9NUM3 307 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 MTCH1Q9NZJ7 389 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 IL36RNQ9UBH0 155 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 ANXA10Q9UJ72 324 aa3.93□□□□□ -1.78
CSMD3-208ENST00000497026 RPUSD1Q9UJJ7 312 aaKnown RBP3.93□□□□□ -1.78
CSMD3-208ENST00000497026 TBL2Q9Y4P3 447 aaKnown RBP3.93□□□□□ -1.78
CSMD3-208ENST00000497026 FBN1P35555 2871 aaKnown RBP3.92□□□□□ -1.78
CSMD3-208ENST00000497026 NIPBLQ6KC79 2804 aaeCLIP3.92□□□□□ -1.78
CSMD3-208ENST00000497026 LOC102724200A0A096LPH7 203 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-208ENST00000497026 A0A0A6YYD4 124 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 IGKV1-12A0A0C4DH73 117 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 CENPVL3A0A0U1RRI6 287 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 GRIFINA4D1Z8 144 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 TAX1BP3O14907 124 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 NDUFB3O43676 98 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 GNG7O60262 68 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 ZNF324O75467 553 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-208ENST00000497026 CST7O76096 145 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 HAND1O96004 215 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 IGKV1D-12P01611 117 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 GPX1P07203 203 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 CD1BP29016 333 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 BLVRBP30043 206 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-208ENST00000497026 DLX1P56177 255 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 SEC11AP67812 179 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 ZNF90Q03938 601 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 PRB3Q04118 309 aaPredicted RBP3.92□□□□□ -1.78
CSMD3-208ENST00000497026 C5orf64Q2M2E5 130 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 TDRG1Q3Y452 100 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 PHLDA2Q53GA4 152 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 FA2HQ7L5A8 372 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 S100A7AQ86SG5 101 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 Q8N7P7 452 aa3.92□□□□□ -1.78
CSMD3-208ENST00000497026 OR1B1Q8NGR6 318 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms