RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HIST1H4AP62805 103 aaKnown RBP2.53□□□□□ -2
VPS13A-212ENST00000493341 DEFB115Q30KQ5 88 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 SPANXN3Q5MJ09 141 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 LHFPL1Q86WI0 220 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 SH3BGRL3Q9H299 93 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 MYO5AQ9Y4I1 1855 aaKnown RBP2.53□□□□□ -2
VPS13A-212ENST00000493341 SSC5DA1L4H1 1573 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 CEP350Q5VT06 3117 aa2.53□□□□□ -2
VPS13A-212ENST00000493341 DOCK1Q14185 1865 aa2.53□□□□□ -2.01
VPS13A-212ENST00000493341 AIPO00170 330 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 IFNA7P01567 189 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 DEFA4P12838 97 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 RPS4Y1P22090 263 aaKnown RBP2.52□□□□□ -2.01
VPS13A-212ENST00000493341 ZNF80P51504 273 aaPredicted RBP2.52□□□□□ -2.01
VPS13A-212ENST00000493341 FOXF1Q12946 379 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 OR52R1Q8NGF1 315 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 OR4C16Q8NGL9 310 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 TM2D3Q9BRN9 247 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 SLC39A9Q9NUM3 307 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 NDUFAF1Q9Y375 327 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 FAM215AQ9Y5M1 114 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 DDX60LQ5H9U9 1706 aaKnown RBP2.52□□□□□ -2.01
VPS13A-212ENST00000493341 MGAMO43451 1857 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 CASP8AP2Q9UKL3 1982 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 LOC285556D6RIA3 1793 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 TRBV19A0A075B6N1 114 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 TRAV38-1A0A0B4J264 116 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 BUB1B-PAK6H3BSN5 160 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 CST8O60676 142 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 OR2J2O76002 312 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 IGLV3-19P01714 112 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 SRIP30626 198 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 EVX1P49640 407 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 TPI1P60174 286 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 KISS1Q15726 138 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 FKBP1CQ5VVH2 108 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 SLC35E3Q7Z769 313 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 EXOC3-AS1Q8N2X6 119 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 GRPEL2Q8TAA5 225 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 DYDC1Q8WWB3 177 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 LYSMD1Q96S90 227 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 ERGIC3Q9Y282 383 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 AMMECR1Q9Y4X0 333 aaPredicted RBP2.52□□□□□ -2.01
VPS13A-212ENST00000493341 RFX7Q2KHR2 1363 aa2.52□□□□□ -2.01
VPS13A-212ENST00000493341 CYB5BO43169 146 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 G6PCP35575 357 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 IGFBP7Q16270 282 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 AGTRAPQ6RW13 159 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 FAM24BQ8N5W8 94 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 PYDC1Q8WXC3 89 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 C2orf50Q96LR7 162 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 SCGB3A1Q96QR1 104 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 PKMYT1Q99640 499 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 DDA1Q9BW61 102 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 MYH1P12882 1939 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 NYNRINQ9P2P1 1898 aaKnown RBP2.51□□□□□ -2.01
VPS13A-212ENST00000493341 MYH8P13535 1937 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 MAP1LC3B2A6NCE7 125 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 RIIAD1A6NNX1 92 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 SLC22A1O15245 554 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 ZNF73O43830 326 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-212ENST00000493341 PRB2P02812 416 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-212ENST00000493341 PSMB8P28062 276 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 DCUN1D2Q6PH85 259 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 TERB2Q8NHR7 220 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 GINS4Q9BRT9 223 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 MAP1LC3BQ9GZQ8 125 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 CHST6Q9GZX3 395 aa2.51□□□□□ -2.01
VPS13A-212ENST00000493341 ODF3BA8MYP8 253 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 CBR1P16152 277 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 AZU1P20160 251 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 LYZL1Q6UWQ5 148 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 LCA10Q71F78 164 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 OR5J2Q8NH18 312 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 SERPINI1Q99574 410 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 TMEM70Q9BUB7 260 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 ZNF471Q9BX82 626 aaPredicted RBP2.5□□□□□ -2.01
VPS13A-212ENST00000493341 HHLA3Q9XRX5 114 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 PARP14Q460N5 1801 aa2.5□□□□□ -2.01
VPS13A-212ENST00000493341 PLXND1Q9Y4D7 1925 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 IGLV10-54A0A075B6I4 117 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 MSMBP08118 114 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 S100GP29377 79 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 HINT1P49773 126 aaPredicted RBP2.49□□□□□ -2.01
VPS13A-212ENST00000493341 MIR17HGQ75NE6 70 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 IMUPQ9GZP8 106 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 A0A0G2JMZ2 1700 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 PLXNB2O15031 1838 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 TRAV7A0A075B6U4 112 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 RFPL4AA6NLU0 287 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 RFPL4AL1F8VTS6 287 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 TSTD3H0UI37 97 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 RNASE2P10153 161 aaKnown RBP2.49□□□□□ -2.01
VPS13A-212ENST00000493341 GABRA4P48169 554 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 PSMD8P48556 350 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 SUPT4H1P63272 117 aaKnown RBP2.49□□□□□ -2.01
VPS13A-212ENST00000493341 LINC01554Q52M75 96 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 KTN1-AS1Q86SY8 53 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 TRAPPC6BQ86SZ2 158 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 HIST3H2BBQ8N257 126 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms