RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 RABAC1Q9UI14 185 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 HIGD1AQ9Y241 93 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 UFC1Q9Y3C8 167 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 TSSC4Q9Y5U2 329 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-229ENST00000490866 SOX21Q9Y651 276 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-229ENST00000490866 NSD1Q96L73 2696 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-229ENST00000490866 MTORP42345 2549 aa5.41□□□□□ -1.54
SYNE1-229ENST00000490866 WI2-2373I1.2A0A1W2PRP0 233 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 LINC00862A6NCI5 91 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 MFSD2BA6NFX1 497 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 M0QZ24 198 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 IGKV1-17P01599 117 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 LGALS1P09382 135 aaKnown RBP5.4□□□□□ -1.54
SYNE1-229ENST00000490866 OR5G3P0C626 314 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 C8orf88P0DMB2 117 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 APELAP0DMC3 54 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 PSG1P11464 419 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 RPL7P18124 248 aaKnown RBP5.4□□□□□ -1.54
SYNE1-229ENST00000490866 FHITP49789 147 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 IFITM2Q01629 132 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 FAM78BQ5VT40 261 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 TMEM182Q6ZP80 229 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-229ENST00000490866 BPIFA4PQ86YQ2 179 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 LINC01006Q8NI28 216 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 FAM213BQ8TBF2 198 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 C4orf3Q8WVX3 66 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 DPF1Q92782 380 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 RAB24Q969Q5 203 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 RPUSD4Q96CM3 377 aaKnown RBP5.4□□□□□ -1.54
SYNE1-229ENST00000490866 RNF125Q96EQ8 232 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 NOL4LQ96MY1 436 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-229ENST00000490866 RSG1Q9BU20 258 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 TMEM14CQ9P0S9 112 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 DMRT1Q9Y5R6 373 aa5.4□□□□□ -1.54
SYNE1-229ENST00000490866 NIPBLQ6KC79 2804 aaeCLIP5.39□□□□□ -1.55
SYNE1-229ENST00000490866 IGKV1D-37A0A075B6S9 117 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 IGKV1OR2-108A0A075B7D4 117 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 HELTA6NFD8 242 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 OR2T8A6NH00 312 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 FBLL1A6NHQ2 334 aaKnown RBP5.39□□□□□ -1.55
SYNE1-229ENST00000490866 F6UZH7 168 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 YIF1AO95070 293 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 NMBP08949 121 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 STAG3L2P0CL84 134 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 STAG3L3P0CL85 134 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 ORM2P19652 201 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 CMC4P56277 68 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-229ENST00000490866 PSG9Q00887 426 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 PDE6HQ13956 83 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 RPEL1Q2QD12 228 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 CLEC19AQ6UXS0 136 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 LINC00305Q7Z4B0 112 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 RPP25LQ8N5L8 163 aaKnown RBP5.39□□□□□ -1.55
SYNE1-229ENST00000490866 OR1B1Q8NGR6 318 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 SH3BGRL3Q9H299 93 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 ESM1Q9NQ30 184 aa5.39□□□□□ -1.55
SYNE1-229ENST00000490866 DAZ1Q9NQZ3 744 aaKnown RBP5.39□□□□□ -1.55
SYNE1-229ENST00000490866 F8P00451 2351 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 NF1P21359 2839 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 A0A1W2PRE2 83 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 MAP1LC3B2A6NCE7 125 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 KRBOX1C9JBD0 128 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 LINC01619G3V211 115 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 PDE6DO43924 150 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 ZNF253O75346 499 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 IL4P05112 153 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 S100A9P06702 114 aaKnown RBP5.38□□□□□ -1.55
SYNE1-229ENST00000490866 HIST1H1EP10412 219 aaKnown RBP5.38□□□□□ -1.55
SYNE1-229ENST00000490866 S100A1P23297 94 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 CRYBB3P26998 211 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 GPR183P32249 361 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 GALR1P47211 349 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 ZNF90Q03938 601 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 TIGITQ495A1 244 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 FAM74A3Q4VXF1 159 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 FBLN7Q53RD9 439 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 MIC13Q5XKP0 118 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 ZNF329Q86UD4 541 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 NDUFA11Q86Y39 141 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 C1QL4Q86Z23 238 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 OR4F17Q8NGA8 305 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 RXFP4Q8TDU9 374 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 WIPF2Q8TF74 440 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-229ENST00000490866 TMEM37Q8WXS4 190 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 TMEM158Q8WZ71 300 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 RCC1LQ96I51 464 aaKnown RBP5.38□□□□□ -1.55
SYNE1-229ENST00000490866 UHRF2Q96PU4 802 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 OR4F4Q96R69 305 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 SHANK2-AS3Q9BTD1 123 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 MAP1LC3BQ9GZQ8 125 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 OR51M1Q9H341 326 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 HRH4Q9H3N8 390 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 GNB4Q9HAV0 340 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 SEPSECSQ9HD40 501 aaKnown RBP5.38□□□□□ -1.55
SYNE1-229ENST00000490866 C19orf73Q9NVV2 129 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 ZMAT5Q9UDW3 170 aaKnown RBP5.38□□□□□ -1.55
SYNE1-229ENST00000490866 VAX2Q9UIW0 290 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 LINC00527Q9UJ94 153 aa5.38□□□□□ -1.55
SYNE1-229ENST00000490866 PUS1Q9Y606 427 aaKnown RBP eCLIP5.38□□□□□ -1.55
SYNE1-229ENST00000490866 SERTM2A0A1B0GWG4 89 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms