RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TRGV10A0A0A0MS01 117 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1B0GTI1 187 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 LOC102725191A0A1B0GVB3 256 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1W2PPV9 198 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 hADV38S2A0JD32 116 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 A6NDN8 102 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RBFOX3A6NFN3 312 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 EEF1E1-BLOC1S5C9J1V9 151 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 FNDC10F2Z333 226 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 H0YJW9 148 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 H3BUT2 72 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SLC17A2O00624 439 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RTL8CO15255 209 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SYNGR1O43759 233 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 NPIPB7O75200 414 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 CA1P00915 261 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 PRH1P02810 166 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 HLA-DPB1P04440 258 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 REG1AP05451 166 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 KLK1P06870 262 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SRP19P09132 144 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 LINC00032P0C843 101 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RPS4Y1P22090 263 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 CD34P28906 385 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RPL12P30050 165 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 VDAC2P45880 294 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TAS2R20P59543 309 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 YPEL3P61236 119 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 HLA-DRB3P79483 266 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF85Q03923 595 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 FUT5Q11128 374 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 PRDX4Q13162 271 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 MSMO1Q15800 293 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 CLEC12BQ2HXU8 276 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TBC1D28Q2M2D7 210 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM97Q5BJF2 176 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 C6orf226Q5I0X4 101 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ACTL10Q5JWF8 245 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 HBMQ6B0K9 141 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RPL7L1Q6DKI1 246 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RASL11AQ6T310 242 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SBSNQ6UWP8 590 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 HRCT1Q6UXD1 115 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SHISA6Q6ZSJ9 500 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 Q6ZUT4 128 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF683Q8IZ20 524 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ATOH7Q8N100 152 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 LRRC25Q8N386 305 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TEX29Q8N6K0 151 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF433Q8N7K0 673 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 CYB561D1Q8N8Q1 229 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 C8orf31Q8N9H6 132 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ZIC4Q8N9L1 334 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 APCDD1LQ8NCL9 501 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR4F17Q8NGA8 305 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR10G2Q8NGC3 310 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR52E2Q8NGJ4 325 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR4C13Q8NGP0 309 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR2K2Q8NGT1 345 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR10AG1Q8NH19 301 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 VSTM2AQ8TAG5 236 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR51E1Q8TCB6 317 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 LMX1AQ8TE12 382 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 CT55Q8WUE5 264 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 PPP1R1CQ8WVI7 109 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TWIST2Q8WVJ9 160 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RTN4IP1Q8WWV3 396 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RPEQ96AT9 228 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 DNAJC19Q96DA6 116 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A38Q96DW6 304 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SMIM19Q96E16 107 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 DNAJA3Q96EY1 480 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 S100A16Q96FQ6 103 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ADTRPQ96IZ2 230 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 IMMP1LQ96LU5 166 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR4C12Q96R67 309 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 OR4F4Q96R69 305 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 IMMP2LQ96T52 175 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 AMELYQ99218 206 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 NIPSNAP3BQ9BS92 247 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 FAM103A1Q9BTL3 118 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SFXN3Q9BWM7 321 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 GGTLC1Q9BX51 225 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RNASE7Q9H1E1 156 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 CXCL16Q9H2A7 254 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RETNQ9HD89 108 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 MANBALQ9NQG1 85 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 CISHQ9NSE2 258 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 IDI2-AS1Q9NZ38 188 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TAAR3PQ9P1P4 343 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 DEC1Q9P2X7 70 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 LHX3Q9UBR4 397 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 POLDIP2Q9Y2S7 368 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 KLHDC2Q9Y2U9 406 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 RPL36Q9Y3U8 105 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SOX21Q9Y651 276 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 SPCS1Q9Y6A9 102 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 LINC00312Q9Y6C7 94 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 PRKDCP78527 4128 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 ZANQ9Y493 2812 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms