RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CSMD3Q7Z407 3707 aa10.18□□□□□ -0.78
SYNE1-226ENST00000488376 SOCS3O14543 225 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 SIX6O95475 246 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 IL5P05113 134 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 FABP1P07148 127 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 ORM2P19652 201 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 C4BPBP20851 252 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 DLK1P80370 383 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 CYP2G1PQ6ZSU1 146 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 STHQ8IWL8 128 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 PPP1R14BQ96C90 147 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 C2orf50Q96LR7 162 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 SCRT1Q9BWW7 348 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 SLC25A32Q9H2D1 315 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 BATF3Q9NR55 127 aa10.17□□□□□ -0.78
SYNE1-226ENST00000488376 FAM24AA6NFZ4 105 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 AP2S1P53680 142 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-226ENST00000488376 S100A10P60903 97 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 SLC38A11Q08AI6 406 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 RAB32Q13637 225 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 GDF5OSQ5U4N7 250 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 BPIFCQ8NFQ6 507 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 OR10P1Q8NGE3 313 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 OR1B1Q8NGR6 318 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 SLC25A22Q9H936 323 aa10.16□□□□□ -0.78
SYNE1-226ENST00000488376 IGSF23A1L1A6 192 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 ZNF98A6NK75 572 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 L7N2F9 121 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 CST7O76096 145 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 VAMP2P63027 116 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 C1orf194Q5T5A4 169 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 UHRF2Q96PU4 802 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 CLEC5AQ9NY25 188 aa10.15□□□□□ -0.78
SYNE1-226ENST00000488376 STARD9Q9P2P6 4700 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 TENM2Q9NT68 2774 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 INMT-MINDY4F8WBC2 141 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 GOSR2O14653 212 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 DEFB4AO15263 64 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 LINC00869P0C866 280 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 NUP62P37198 522 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-226ENST00000488376 BCAP31P51572 246 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 CAV2P51636 162 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 PATE2Q6UY27 113 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 OR8I2Q8N0Y5 310 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 TMEM217Q8N7C4 229 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 IL17DQ8TAD2 202 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 C20orf173Q96LM9 149 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 MGST2Q99735 147 aa10.14□□□□□ -0.79
SYNE1-226ENST00000488376 F6UB75 175 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 H3BMM0 161 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 H3BRN7 92 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 DEDDO75618 318 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 SNRPD3P62318 126 aaKnown RBP10.13□□□□□ -0.79
SYNE1-226ENST00000488376 IGFL4Q6B9Z1 124 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 OR11H2Q8NH07 326 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 LINC00052Q96N35 136 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 RARRES2Q99969 163 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 MARVELD1Q9BSK0 173 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 RSG1Q9BU20 258 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 TMEM147Q9BVK8 224 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 SLC25A39Q9BZJ4 359 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-226ENST00000488376 NPVFQ9HCQ7 196 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 MGAT4CQ9UBM8 478 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 FBXL17Q9UF56 701 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 PFDN2Q9UHV9 154 aa10.13□□□□□ -0.79
SYNE1-226ENST00000488376 FNDC10F2Z333 226 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 AGPAT2O15120 278 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 CFDP00746 253 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-226ENST00000488376 PRB4P10163 310 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-226ENST00000488376 PLP1P60201 277 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 PMS2P11Q13670 270 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 TEPPQ6URK8 271 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 GATAD1Q8WUU5 269 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 SHANK2-AS3Q9BTD1 123 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 GPN1Q9HCN4 374 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-226ENST00000488376 LYRM2Q9NU23 88 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-226ENST00000488376 SLC45A2Q9UMX9 530 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 HIGD1AQ9Y241 93 aa10.12□□□□□ -0.79
SYNE1-226ENST00000488376 RYR3Q15413 4870 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 HYPMO75409 117 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 IGKV3-20P01619 116 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 OR5G3P0C626 314 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 HLA-DRB4P13762 266 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 PSMB3P49720 205 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 H2BFSP57053 126 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 FXYD7P58549 80 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 MORN5Q5VZ52 161 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 TMEM252Q8N6L7 170 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 CSNK1G2-AS1Q8NCQ2 148 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 ARL6Q9H0F7 186 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 SEPSECSQ9HD40 501 aaKnown RBP10.11□□□□□ -0.79
SYNE1-226ENST00000488376 OR5AC2Q9NZP5 309 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 HLA-DRB4X5D2U9 266 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 AGRNO00468 2067 aa10.11□□□□□ -0.79
SYNE1-226ENST00000488376 TRAV8-2A0A0B4J237 113 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 H0YIZ8 118 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 SPP1P10451 314 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 GALR1P47211 349 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 SELENOTP62341 195 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms