RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 UMODL1-AS1Q8N2C9 162 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 FAM24BQ8N5W8 94 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 TMEM229BQ8NBD8 167 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 RPS4Y2Q8TD47 263 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 C16orf78Q8WTQ4 265 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 PPP1R1CQ8WVI7 109 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 HIST1H2BHQ93079 126 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 PPCDCQ96CD2 204 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 MS4A6EQ96DS6 147 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 PGLYRP3Q96LB9 341 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 PHB2Q99623 299 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 HIST1H2BNQ99877 126 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 HIST1H2BMQ99879 126 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 HIST1H2BLQ99880 126 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 PRRT1Q99946 306 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 ADAT1Q9BUB4 502 aaKnown RBP1.94□□□□□ -2.1
USP48-209ENST00000487880 SLC35B3Q9H1N7 401 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 SLC2A9Q9NRM0 540 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 LYRM2Q9NU23 88 aaPredicted RBP1.94□□□□□ -2.1
USP48-209ENST00000487880 TVP23BQ9NYZ1 205 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 GNG8Q9UK08 70 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 VPREB3Q9UKI3 123 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 TBL2Q9Y4P3 447 aaKnown RBP1.94□□□□□ -2.1
USP48-209ENST00000487880 PHLDA3Q9Y5J5 127 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 OR51B4Q9Y5P0 310 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 STRCQ7RTU9 1775 aa1.94□□□□□ -2.1
USP48-209ENST00000487880 COL5A3P25940 1745 aaPredicted RBP1.94□□□□□ -2.1
USP48-209ENST00000487880 TLCD2A6NGC4 264 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 IFITM5A6NNB3 132 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 IQCF5A8MTL0 148 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 C17orf98A8MV24 154 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 LOC730098B7Z3J9 87 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 UMAD1C9J7I0 102 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 TMEM238C9JI98 176 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 M0R036 132 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 PLPP3O14495 311 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 TNFSF15O95150 251 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 IFNA6P05013 189 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 NBEAP1P0C6P0 100 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 OR12D1P0DN82 309 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 CXCL8P10145 99 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 ZNF7P17097 686 aaPredicted RBP1.93□□□□□ -2.1
USP48-209ENST00000487880 GZMHP20718 246 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 CCNOP22674 350 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 HSD11B1P28845 292 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 OR10J1P30954 320 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 BRS3P32247 399 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 AKR1C2P52895 323 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 TAS2R20P59543 309 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 UBE2G2P60604 165 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 AKR1C1Q04828 323 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 ELOBQ15370 118 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 ZBTB6Q15916 424 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 ACOT6Q3I5F7 207 aaPredicted RBP1.93□□□□□ -2.1
USP48-209ENST00000487880 AKIRIN2Q53H80 203 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 PCOTHQ58A44 107 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 OR2T2Q6IF00 324 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 SMIM5Q71RC9 77 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 GRINAQ7Z429 371 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 TMED4Q7Z7H5 227 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 LYG2Q86SG7 212 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 C20orf196Q8IYI0 205 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 MORN4Q8NDC4 146 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 PLPP5Q8NEB5 264 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 OR4C16Q8NGL9 310 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 TMEM106AQ96A25 262 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 CLDN23Q96B33 292 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 DDIT4LQ96D03 193 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 SMIM19Q96E16 107 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 AIF1LQ9BQI0 150 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 MIEN1Q9BRT3 115 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 BCL2L10Q9HD36 194 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 TMEM106BQ9NUM4 274 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 VPS29Q9UBQ0 182 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 SMPXQ9UHP9 88 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 URGCP-MRPS24S4R325 110 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 COL11A1P12107 1806 aaPredicted RBP1.93□□□□□ -2.1
USP48-209ENST00000487880 ZNF236Q9UL36 1845 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 COL4A1P02462 1669 aa1.93□□□□□ -2.1
USP48-209ENST00000487880 ANK1P16157 1881 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 SCN8AQ9UQD0 1980 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 IGHV3OR15-7A0A075B7D8 119 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 TRAV30A0A087WSZ9 112 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 BORCS7-ASMTA0A0B4J1R7 106 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 DAPL1A0PJW8 107 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 OR51F1A6NGY5 319 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 FTCDNL1E5RQL4 147 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 F6UZH7 168 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 K7ERU9 68 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 M0R129 80 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 TRGC1P0CF51 173 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 RD3LP0DJH9 198 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 MPC1LP0DKB6 136 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 SMIM10L2AP0DMW4 78 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 SMIM10L2BP0DMW5 78 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 FABP4P15090 132 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 HMGA1P17096 107 aaKnown RBP1.92□□□□□ -2.1
USP48-209ENST00000487880 RPS4Y1P22090 263 aaKnown RBP1.92□□□□□ -2.1
USP48-209ENST00000487880 LPAR6P43657 344 aa1.92□□□□□ -2.1
USP48-209ENST00000487880 CAPZBP47756 277 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms