RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 LDLRAD2Q5SZI1 272 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 LYRM7Q5U5X0 104 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 ASPHD2Q6ICH7 369 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 CLEC2AQ6UVW9 174 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 MARCH3Q86UD3 253 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 CALHM1Q8IU99 346 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 NECAP1Q8NC96 275 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 OR2Y1Q8NGV0 311 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 OR10AG1Q8NH19 301 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 DOK4Q8TEW6 326 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 AMELYQ99218 206 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 RSG1Q9BU20 258 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 MAP1LC3CQ9BXW4 147 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 PLA2G2FQ9BZM2 168 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 AICDAQ9GZX7 198 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 HRASLS2Q9NWW9 162 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 WASHC3Q9Y3C0 194 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 DOCK9Q9BZ29 2069 aa3.89□□□□□ -1.79
USP40-213ENST00000483216 ZNF816-ZNF321PA0A0X1KG74 233 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 TEX50A0A1B0GTY4 177 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 C17orf51A8MQB3 221 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 G3V4G9 280 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 H3BRM9 83 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 M0R135 149 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 M0R2Z0 102 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 IGKV1D-16P01601 117 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 PRB2P02812 416 aaPredicted RBP3.88□□□□□ -1.79
USP40-213ENST00000483216 CT62P0C5K7 136 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 HIST1H1EP10412 219 aaKnown RBP3.88□□□□□ -1.79
USP40-213ENST00000483216 FABP2P12104 132 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 PTNP21246 168 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 CAPZBP47756 277 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 GNG4P50150 75 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 PPOXP50336 477 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 RBM11P57052 281 aaKnown RBP3.88□□□□□ -1.79
USP40-213ENST00000483216 PLP1P60201 277 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 SP6Q3SY56 376 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 C10orf128Q5T292 105 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 TMEM14EPQ6UXP3 125 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 DGAT2L6Q6ZPD8 337 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 C6orf201Q7Z4U5 140 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 S100A7AQ86SG5 101 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 RPS19BP1Q86WX3 136 aaKnown RBP3.88□□□□□ -1.79
USP40-213ENST00000483216 BPIFA4PQ86YQ2 179 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 ZNF439Q8NDP4 499 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 OR4X2Q8NGF9 303 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 OR8B12Q8NGG6 310 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 OR1L6Q8NGR2 347 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 FAM131CQ96AQ9 280 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 CLDN23Q96B33 292 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 NRTNQ99748 197 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 PPDPFQ9H3Y8 114 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 TMEM38BQ9NVV0 291 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 SMPXQ9UHP9 88 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 TRAPPC2LQ9UL33 140 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 NUP210LQ5VU65 1888 aa3.88□□□□□ -1.79
USP40-213ENST00000483216 MDC1Q14676 2089 aaKnown RBP3.87□□□□□ -1.79
USP40-213ENST00000483216 ATG2BQ96BY7 2078 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 IGHV1OR15-1A0A075B7D0 117 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 IZUMO1RA6ND01 250 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 HELTA6NFD8 242 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 F8W1H4 67 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 H0YJW9 148 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 K7EQS6 105 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 PGLYRP1O75594 196 aaPredicted RBP3.87□□□□□ -1.79
USP40-213ENST00000483216 SNRNP200O75643 2136 aaKnown RBP3.87□□□□□ -1.79
USP40-213ENST00000483216 OR7C1O76099 320 aaPredicted RBP3.87□□□□□ -1.79
USP40-213ENST00000483216 HBZP02008 142 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 STAG3L3P0CL85 134 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 CSN1S1P47710 185 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 HINT1P49773 126 aaPredicted RBP3.87□□□□□ -1.79
USP40-213ENST00000483216 LHX2P50458 406 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 MAJINQ3KP22 176 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 SPANXN5Q5MJ07 72 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 UBALD2Q8IYN6 164 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 GAPTQ8N292 157 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 RPP25LQ8N5L8 163 aaKnown RBP3.87□□□□□ -1.79
USP40-213ENST00000483216 ZIC4Q8N9L1 334 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 ST6GALNAC3Q8NDV1 305 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 OR52E5Q8NH55 327 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 OR51H1Q8NH63 302 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 OR10G6Q8NH81 332 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 APOBEC3DQ96AK3 386 aaPredicted RBP3.87□□□□□ -1.79
USP40-213ENST00000483216 SH2D2AQ9NP31 389 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 YAE1D1Q9NRH1 226 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 TAAR3PQ9P1P4 343 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 TICRRQ7Z2Z1 1910 aa3.87□□□□□ -1.79
USP40-213ENST00000483216 GOLGA4Q13439 2230 aaKnown RBP3.86□□□□□ -1.79
USP40-213ENST00000483216 IGLV3-32A0A0A0MS00 114 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 UBE2L5PA0A1B0GUS4 154 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 ANKRD30BLA7E2S9 258 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 C4orf51C9J302 202 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 H3BSH0 61 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 RAB29O14966 203 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 SLC31A1O15431 190 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 TRAPPC6AO75865 159 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 STATHP02808 62 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 ZNF17P17021 662 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 GZMHP20718 246 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 OPRM1P35372 400 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms