RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 TECRQ9NZ01 308 aaKnown RBP6.33□□□□□ -1.4
SYNE1-225ENST00000481502 RABAC1Q9UI14 185 aa6.33□□□□□ -1.4
SYNE1-225ENST00000481502 HIGD1AQ9Y241 93 aa6.33□□□□□ -1.4
SYNE1-225ENST00000481502 U3KQE9 123 aa6.33□□□□□ -1.4
SYNE1-225ENST00000481502 IGHV4OR15-8A0A075B7B6 117 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 A0A087WW49 117 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 TRAV1-1A0A0B4J248 108 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 A0A1W2PPV4 95 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 PPP5D1E7EU14 171 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 M0QZ24 198 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 COX7A2P2O60397 106 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 YIF1AO95070 293 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 TRBV12-3P01733 135 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 IGHV3-23P01764 117 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 INSL3P51460 131 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 KRTAP10-3P60369 221 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 RAB2AP61019 212 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 SRSF2Q01130 221 aaKnown RBP6.32□□□□□ -1.4
SYNE1-225ENST00000481502 SAMD13Q5VXD3 122 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 C10orf113Q5VZT2 155 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 PQLC2Q6ZP29 291 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 C8orf86Q6ZUL3 223 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 ZNF680Q8NEM1 530 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 WFDC9Q8NEX5 89 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 OR10G4Q8NGN3 311 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 OR10G9Q8NGN4 311 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 OR10G7Q8NGN6 311 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 MBD3L1Q8WWY6 194 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 TMEM37Q8WXS4 190 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 ZNF414Q96IQ9 312 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 RAX2Q96IS3 184 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 SHANK2-AS3Q9BTD1 123 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 ACTR3CQ9C0K3 210 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-225ENST00000481502 VSIRQ9H7M9 311 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 RPRMQ9NS64 109 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 CLEC5AQ9NY25 188 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 TMEM14CQ9P0S9 112 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 UBQLN2Q9UHD9 624 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 FUT9Q9Y231 359 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 S4R3C0 116 aa6.32□□□□□ -1.4
SYNE1-225ENST00000481502 COL6A5A8TX70 2615 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 CTXND1A0A1B0GTU2 59 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 RGS13O14921 159 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 BUB3O43684 328 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 HBE1P02100 147 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 RPL7P18124 248 aaKnown RBP6.31□□□□□ -1.4
SYNE1-225ENST00000481502 ORM2P19652 201 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 TAGLN2P37802 199 aaKnown RBP6.31□□□□□ -1.4
SYNE1-225ENST00000481502 PPT1P50897 306 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 LYZP61626 148 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 DEFA5Q01523 94 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 USF2Q15853 346 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-225ENST00000481502 PATE2Q6UY27 113 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 TMEM182Q6ZP80 229 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-225ENST00000481502 LINC00305Q7Z4B0 112 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 RPP25LQ8N5L8 163 aaKnown RBP6.31□□□□□ -1.4
SYNE1-225ENST00000481502 OR9G4Q8NGQ1 327 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 OR1B1Q8NGR6 318 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 OR2K2Q8NGT1 345 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 TMED6Q8WW62 240 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 OR5B12Q96R08 314 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 MCRIP2Q9BUT9 160 aaKnown RBP6.31□□□□□ -1.4
SYNE1-225ENST00000481502 SLC25A39Q9BZJ4 359 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-225ENST00000481502 SH3BGRL3Q9H299 93 aa6.31□□□□□ -1.4
SYNE1-225ENST00000481502 TRAV25A0A0B4J276 109 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 IGHV7-4-1A0A0J9YVY3 117 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 ZNF320A2RRD8 509 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 HELTA6NFD8 242 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 ZNF98A6NK75 572 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 H3BRN7 92 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 OVOL1O14753 267 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 NDUFS6O75380 124 aaKnown RBP6.3□□□□□ -1.4
SYNE1-225ENST00000481502 CXorf1O96002 111 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 PF4P02776 101 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 STAG3L2P0CL84 134 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 STAG3L3P0CL85 134 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 GATA2P23769 480 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-225ENST00000481502 CDC34P49427 236 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-225ENST00000481502 PSMB3P49720 205 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 RAB14P61106 215 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 GUK1Q16774 197 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 KHDC3LQ587J8 217 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 FAM78BQ5VT40 261 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 BPIFA4PQ86YQ2 179 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 C11orf44Q8N8P7 122 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 SPATA3Q8NHX4 192 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 LYPD6BQ8NI32 183 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 SUN5Q8TC36 379 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 RCC1LQ96I51 464 aaKnown RBP6.3□□□□□ -1.4
SYNE1-225ENST00000481502 TXNDC17Q9BRA2 123 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 PBDC1Q9BVG4 233 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 GPR61Q9BZJ8 451 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 SEPSECSQ9HD40 501 aaKnown RBP6.3□□□□□ -1.4
SYNE1-225ENST00000481502 SMPXQ9UHP9 88 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 ARL2-SNX15V9GYD0 113 aa6.3□□□□□ -1.4
SYNE1-225ENST00000481502 TRAV2A0A0B4J234 112 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 TMEM213A2RRL7 107 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 C2orf70A6NJV1 201 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 ZNF253O75346 499 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 H2AFB1P0C5Y9 115 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms