RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 MOSP00540 346 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 TNFRSF1AP19438 455 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 HIST1H1AQ02539 215 aaPredicted RBP10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 SPRNQ5BIV9 151 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 C16orf54Q6UWD8 224 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 TMEM116Q8NCL8 245 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 RNASE8Q8TDE3 154 aaKnown RBP10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 CCL13Q99616 98 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 SSBP4Q9BWG4 385 aaPredicted RBP10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 OTORQ9NRC9 128 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 RNF24Q9Y225 148 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 CFAP46Q8IYW2 2715 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 TNCP24821 2201 aa10.89□□□□□ -0.67
HLA-DMA-208ENST00000477541 SPAARA0A1B0GVQ0 90 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 VWC2LB2RUY7 222 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 CHEK1O14757 476 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 CD5LO43866 347 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 TCRAP04437 139 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 GPR6P46095 362 aaPredicted RBP10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 BVES-AS1Q5T3Y7 98 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 ATP1A1-AS1Q5TC04 95 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 Q6AWC8 147 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 ZNF841Q6ZN19 808 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 NUP37Q8NFH4 326 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 SCRT2Q9NQ03 307 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 PRR14LQ5THK1 2151 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 APC2O95996 2303 aa10.88□□□□□ -0.67
HLA-DMA-208ENST00000477541 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 CGB1A6NKQ9 187 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 GP9P14770 177 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 COL8A2P25067 703 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 VAMP3Q15836 100 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 FAM216BQ8N7L0 139 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 TEX45Q8NA69 505 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 C8orf46Q8TAG6 207 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 H1FXQ92522 213 aaKnown RBP10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 INTS1Q8N201 2190 aaKnown RBP10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 TAX1BP3O14907 124 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 IGLV2-23P01705 113 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 HOXB4P17483 251 aaPredicted RBP10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 GNG5P63218 68 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 SSBP2P81877 361 aaPredicted RBP10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 LINC01545Q5VT33 79 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 TCF24Q7RTU0 167 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 GTSF1Q8WW33 167 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 RND1Q92730 232 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 CLEC5AQ9NY25 188 aa10.87□□□□□ -0.67
HLA-DMA-208ENST00000477541 ZNF462Q96JM2 2506 aa10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 RIGQ13278 110 aa10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 FAM201AQ5SY85 155 aa10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 DUX4L9Q6RFH8 374 aaPredicted RBP10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 Q86TA4 180 aa10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 FDCSPQ8NFU4 85 aa10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 Q9H3A6 140 aa10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 RAXQ9Y2V3 346 aa10.86□□□□□ -0.67
HLA-DMA-208ENST00000477541 CELSR3Q9NYQ7 3312 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 MYO18BQ8IUG5 2567 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 SEC11AP67812 179 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 MPV17L2Q567V2 206 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 DHRS13Q6UX07 377 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 KIR3DL3Q8N743 410 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 OR1B1Q8NGR6 318 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 ST6GALNAC6Q969X2 333 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 HECTD1Q9ULT8 2610 aa10.85□□□□□ -0.67
HLA-DMA-208ENST00000477541 A0A1W2PPI3 338 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 NUDT3O95989 172 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 PRB1P04280 392 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 CSN1S1P47710 185 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 CCL11P51671 97 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 SEM1Q6ZVN7 128 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 LYPD1Q8N2G4 141 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 DEFB108BQ8NET1 73 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 TNFRSF14Q92956 283 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 PGLYRP4Q96LB8 373 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 PEF1Q9UBV8 284 aaKnown RBP10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 A0A1B0GUT8 65 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 APOHP02749 345 aaPredicted RBP10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 ORM2P19652 201 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 COL8A1P27658 744 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 C21orf62-AS1Q17RA5 79 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 ZNF474Q6S9Z5 364 aaPredicted RBP10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 SMIM15Q7Z3B0 74 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 BLNKQ8WV28 456 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 SRSF8Q9BRL6 282 aaKnown RBP10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 HIGD1AQ9Y241 93 aa10.84□□□□□ -0.67
HLA-DMA-208ENST00000477541 E7EUB6 86 aa10.83□□□□□ -0.68
HLA-DMA-208ENST00000477541 COX8AP10176 69 aa10.83□□□□□ -0.68
HLA-DMA-208ENST00000477541 PSMG4Q5JS54 123 aa10.83□□□□□ -0.68
HLA-DMA-208ENST00000477541 VHLLQ6RSH7 139 aa10.83□□□□□ -0.68
HLA-DMA-208ENST00000477541 TMEM75Q8N9X5 138 aa10.83□□□□□ -0.68
HLA-DMA-208ENST00000477541 OR1N2Q8NGR9 330 aa10.83□□□□□ -0.68
HLA-DMA-208ENST00000477541 K7EQM0 130 aa10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 HTR1DP28221 377 aa10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 RPL27AP46776 148 aaKnown RBP10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 C1orf185Q5T7R7 199 aa10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 TMEM200BQ69YZ2 307 aa10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 LINC00322Q6ZN03 302 aaPredicted RBP10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 S100A7AQ86SG5 101 aa10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 OR10AG1Q8NH19 301 aa10.82□□□□□ -0.68
HLA-DMA-208ENST00000477541 AP5S1Q9NUS5 200 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms