RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 NMUP48645 174 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 WT1-ASQ06250 92 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 COL25A1Q9BXS0 654 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-220ENST00000477528 PRR20EP86478 221 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 PRR20CP86479 221 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 PRR20DP86480 221 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 PRR20BP86481 221 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 PRR20AP86496 221 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 PRDM13Q9H4Q3 707 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 CBY1Q9Y3M2 126 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 A0A0G2JLM5 398 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 TFPI2P48307 235 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 C7orf69Q9H7B7 122 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 WISP2O76076 250 aa11.81□□□□□ -0.52
HDAC6-220ENST00000477528 KLF17Q5JT82 389 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-220ENST00000477528 OR4C46A6NHA9 309 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 ORMDL3Q8N138 153 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 C8orf31Q8N9H6 132 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 VPS25Q9BRG1 176 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 FABP5P3A8MUU1 101 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 FOSL1P15407 271 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 C11orf52Q96A22 123 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 TMEM208Q9BTX3 173 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 TCF15Q12870 199 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 CYB5R2Q6BCY4 276 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 PET117Q6UWS5 81 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 NUP35Q8NFH5 326 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 C5orf30Q96GV9 206 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 GUSBP1Q15486 140 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 ZGRF1Q86YA3 2104 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 LINC00479Q96M42 142 aa11.8□□□□□ -0.52
HDAC6-220ENST00000477528 LSM4Q9Y4Z0 139 aaKnown RBP11.79□□□□□ -0.52
HDAC6-220ENST00000477528 TOMM40O96008 361 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 HIST1H1AQ02539 215 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-220ENST00000477528 LYPD1Q8N2G4 141 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 MUC21A0A0G2JKD1 596 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 MUC21A0A140T8X8 626 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 CNTFRP26992 372 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 HERVK_113P61574 105 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 MUC21Q5SSG8 566 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 SMIM12Q96EX1 92 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 ASCL2Q99929 193 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 SLC25A2Q9BXI2 301 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 TRBV20OR9-2A0A075B6H5 130 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 GGTLC3B5MD39 225 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 ZNF114Q8NC26 417 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 DDB2Q92466 427 aa11.79□□□□□ -0.52
HDAC6-220ENST00000477528 LINC00614P0C842 121 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 DIAPH2-AS1Q14236 149 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 ZNF841Q6ZN19 808 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 C14orf144Q96I85 54 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 C15orf32Q32M92 178 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 NIT1Q86X76 327 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 DYNLRB2Q8TF09 96 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 CHCHD1Q96BP2 118 aaKnown RBP11.78□□□□□ -0.52
HDAC6-220ENST00000477528 ABCA4P78363 2273 aa11.78□□□□□ -0.52
HDAC6-220ENST00000477528 J3QR89 54 aa11.77□□□□□ -0.52
HDAC6-220ENST00000477528 GZMBP10144 247 aa11.77□□□□□ -0.52
HDAC6-220ENST00000477528 TCTAP57738 103 aa11.77□□□□□ -0.52
HDAC6-220ENST00000477528 GTF2H5Q6ZYL4 71 aa11.77□□□□□ -0.52
HDAC6-220ENST00000477528 SHISA9B4DS77 424 aa11.77□□□□□ -0.52
HDAC6-220ENST00000477528 PMCHL2Q9BQD1 86 aa11.77□□□□□ -0.52
HDAC6-220ENST00000477528 USF3Q68DE3 2245 aa11.77□□□□□ -0.53
HDAC6-220ENST00000477528 NUDT3O95989 172 aa11.77□□□□□ -0.53
HDAC6-220ENST00000477528 HTN1P15515 57 aa11.77□□□□□ -0.53
HDAC6-220ENST00000477528 TPSG1Q9NRR2 321 aa11.77□□□□□ -0.53
HDAC6-220ENST00000477528 KLF2Q9Y5W3 355 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-220ENST00000477528 SHANK2-AS3Q9BTD1 123 aa11.77□□□□□ -0.53
HDAC6-220ENST00000477528 CTSZQ9UBR2 303 aa11.77□□□□□ -0.53
HDAC6-220ENST00000477528 ZNF562Q6V9R5 426 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 SYT8Q8NBV8 401 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 ZNF414Q96IQ9 312 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 MSMPQ1L6U9 139 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 C1orf194Q5T5A4 169 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 KIR3DL3Q8N743 410 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 YPEL3P61236 119 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-220ENST00000477528 CR1LQ2VPA4 569 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 SCGB1D4Q6XE38 83 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 THAP8Q8NA92 274 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 MOB4Q9Y3A3 225 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 Q0VG73 95 aa11.76□□□□□ -0.53
HDAC6-220ENST00000477528 TRAV8-1A0A0A6YYK1 113 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 MRPL27Q9P0M9 148 aaKnown RBP11.75□□□□□ -0.53
HDAC6-220ENST00000477528 WNK2Q9Y3S1 2297 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 MALRD1Q5VYJ5 2156 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 V9GYV3 84 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 TCF21O43680 179 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 DLX1P56177 255 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 PSG3Q16557 428 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 Q86TA4 180 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 TRAV9-2A0A087WT02 112 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 TRAV41A0A0B4J266 112 aa11.75□□□□□ -0.53
HDAC6-220ENST00000477528 RPL15P61313 204 aaKnown RBP11.75□□□□□ -0.53
HDAC6-220ENST00000477528 TRAV40A0A0B4J280 105 aa11.74□□□□□ -0.53
HDAC6-220ENST00000477528 IGHV3-11P01762 117 aa11.74□□□□□ -0.53
HDAC6-220ENST00000477528 P0C879 139 aa11.74□□□□□ -0.53
HDAC6-220ENST00000477528 SNRPD3P62318 126 aaKnown RBP11.74□□□□□ -0.53
HDAC6-220ENST00000477528 COL5A1P20908 1838 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-220ENST00000477528 SPTAN1Q13813 2472 aaKnown RBP11.74□□□□□ -0.53
HDAC6-220ENST00000477528 ASIPP42127 132 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms