RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SPANXN5Q5MJ07 72 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 OR8G2PQ6IF36 304 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 C20orf173Q96LM9 149 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 TRGV9Q99603 122 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 HLA-DRB4X5D2U9 266 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 C9orf170A2RU37 121 aa12□□□□□ -0.49
USP40-212ENST00000473191 SNRPGP15A8MWD9 76 aa12□□□□□ -0.49
USP40-212ENST00000473191 CCNKO75909 580 aa12□□□□□ -0.49
USP40-212ENST00000473191 BTCP35070 178 aa12□□□□□ -0.49
USP40-212ENST00000473191 NKX2-1P43699 371 aaPredicted RBP12□□□□□ -0.49
USP40-212ENST00000473191 ATP5IP56385 69 aaPredicted RBP12□□□□□ -0.49
USP40-212ENST00000473191 TMEM41BQ5BJD5 291 aa12□□□□□ -0.49
USP40-212ENST00000473191 HRH4Q9H3N8 390 aa12□□□□□ -0.49
USP40-212ENST00000473191 POLR2GP62487 172 aaKnown RBP eCLIP11.99□□□□□ -0.49
USP40-212ENST00000473191 C12orf74Q32Q52 190 aa11.99□□□□□ -0.49
USP40-212ENST00000473191 ZNF709Q8N972 641 aa11.99□□□□□ -0.49
USP40-212ENST00000473191 SLC25A32Q9H2D1 315 aa11.99□□□□□ -0.49
USP40-212ENST00000473191 SAV1Q9H4B6 383 aaPredicted RBP11.99□□□□□ -0.49
USP40-212ENST00000473191 SEPSECSQ9HD40 501 aaKnown RBP11.99□□□□□ -0.49
USP40-212ENST00000473191 PMS2P5A8MQ11 134 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 MED6O75586 246 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 NDUFB6O95139 128 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 ANXA7P20073 488 aaKnown RBP11.98□□□□□ -0.49
USP40-212ENST00000473191 IGFL4Q6B9Z1 124 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 ACOT7LQ6ZUV0 252 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 DEDD2Q8WXF8 326 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 SLC35B3Q9H1N7 401 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 SLC25A22Q9H936 323 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 PTTG2Q9NZH5 202 aa11.98□□□□□ -0.49
USP40-212ENST00000473191 PRB4P10163 310 aaPredicted RBP11.97□□□□□ -0.49
USP40-212ENST00000473191 UBE2MP61081 183 aaKnown RBP11.97□□□□□ -0.49
USP40-212ENST00000473191 ID3Q02535 119 aa11.97□□□□□ -0.49
USP40-212ENST00000473191 SPANXN2Q5MJ10 180 aa11.97□□□□□ -0.49
USP40-212ENST00000473191 ZNF705AQ6ZN79 300 aaPredicted RBP11.97□□□□□ -0.49
USP40-212ENST00000473191 OR8I2Q8N0Y5 310 aa11.97□□□□□ -0.49
USP40-212ENST00000473191 OR4D5Q8NGN0 318 aa11.97□□□□□ -0.49
USP40-212ENST00000473191 PPP1R14BQ96C90 147 aa11.97□□□□□ -0.49
USP40-212ENST00000473191 IGHV3OR16-12A0A075B7B8 117 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 ZNF98A6NK75 572 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 OR4E1P0C645 316 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 ORM2P19652 201 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 PSMB3P49720 205 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 PAX9P55771 341 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 C1orf194Q5T5A4 169 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 OR4B1Q8NGF8 309 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 CIB3Q96Q77 187 aaPredicted RBP11.96□□□□□ -0.49
USP40-212ENST00000473191 PLA2G2EQ9NZK7 142 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 DOK5Q9P104 306 aa11.96□□□□□ -0.49
USP40-212ENST00000473191 IGHV4-4A0A075B6R2 117 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 ZNF705FA8MVS1 300 aaPredicted RBP11.95□□□□□ -0.5
USP40-212ENST00000473191 C11orf94C9JXX5 98 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 SSSCA1O60232 199 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 ZNF705DP0CH99 300 aaPredicted RBP11.95□□□□□ -0.5
USP40-212ENST00000473191 ZNF705BP0CI00 300 aaPredicted RBP11.95□□□□□ -0.5
USP40-212ENST00000473191 NUTF2P61970 127 aaKnown RBP11.95□□□□□ -0.5
USP40-212ENST00000473191 AKR1C1Q04828 323 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 TRIQKQ629K1 86 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 FOXI2Q6ZQN5 318 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 OR1B1Q8NGR6 318 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 COQ8AQ8NI60 647 aa11.95□□□□□ -0.5
USP40-212ENST00000473191 STRAPQ9Y3F4 350 aaKnown RBP11.95□□□□□ -0.5
USP40-212ENST00000473191 TRAV10A0A0B4J240 114 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 PIGBOS1A0A0B4J2F0 54 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 FABP1P07148 127 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 NUP62P37198 522 aaPredicted RBP11.94□□□□□ -0.5
USP40-212ENST00000473191 ID1P41134 155 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 EMP1P54849 157 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 RRAS2P62070 204 aaPredicted RBP11.94□□□□□ -0.5
USP40-212ENST00000473191 RPP30P78346 268 aaKnown RBP11.94□□□□□ -0.5
USP40-212ENST00000473191 FAM78BQ5VT40 261 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 C1orf158Q8N1D5 194 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 RSG1Q9BU20 258 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 C1QTNF4Q9BXJ3 329 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 PSENENQ9NZ42 101 aa11.94□□□□□ -0.5
USP40-212ENST00000473191 TRAV8-2A0A0B4J237 113 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 A0A0J9YX75 114 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 SMCO3A2RU48 225 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 NAP1L6A6NFF2 107 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 PRM2P04554 102 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 IL7P13232 177 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 INPP1P49441 399 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 C16orf92Q96LL3 132 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 PFDN2Q9UHV9 154 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 DNAH2Q9P225 4427 aa11.93□□□□□ -0.5
USP40-212ENST00000473191 DEFB131BA0A096LNP1 70 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 ISLRO14498 428 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 PLA2G10O15496 165 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 SCGB1D2O95969 90 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 METTL15P1P0C7V9 234 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 ARL16Q0P5N6 197 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 CYP2G1PQ6ZSU1 146 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 TMEM144Q7Z5S9 345 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 RNF182Q8N6D2 247 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 BPIFCQ8NFQ6 507 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 UHRF2Q96PU4 802 aa11.92□□□□□ -0.5
USP40-212ENST00000473191 H3BRN7 92 aa11.91□□□□□ -0.5
USP40-212ENST00000473191 CCSO14618 274 aa11.91□□□□□ -0.5
USP40-212ENST00000473191 TCTAP57738 103 aa11.91□□□□□ -0.5
USP40-212ENST00000473191 PSG9Q00887 426 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms