RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CLEC19AQ6UXS0 136 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 PATE2Q6UY27 113 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 SEC11CQ9BY50 192 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 SLC35B3Q9H1N7 401 aa9.96□□□□□ -0.82
VPS13D-205ENST00000473099 MRPL27Q9P0M9 148 aaKnown RBP9.96□□□□□ -0.82
VPS13D-205ENST00000473099 NSD1Q96L73 2696 aaPredicted RBP9.95□□□□□ -0.82
VPS13D-205ENST00000473099 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.95□□□□□ -0.82
VPS13D-205ENST00000473099 FAM181BA6NEQ2 426 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 IGHV3-23P01764 117 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 ADMP35318 185 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 DEFA5Q01523 94 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 MEF2BQ02080 365 aaPredicted RBP9.95□□□□□ -0.82
VPS13D-205ENST00000473099 ICAM4Q14773 271 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 TMEM95Q3KNT9 176 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 ZNF343Q6P1L6 599 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 RNF152Q8N8N0 203 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 OR5AU1Q8NGC0 362 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 TMEM190Q8WZ59 177 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 FAM167A-AS1Q96KT0 104 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 SMR3AQ99954 134 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 CHRDL1Q9BU40 450 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 SLC25A2Q9BXI2 301 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 TMPRSS5Q9H3S3 457 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 TMEM231Q9H6L2 316 aa9.95□□□□□ -0.82
VPS13D-205ENST00000473099 F8W036 122 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 TMEM250H0YL14 139 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 H3BRN7 92 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 SFTA3P0C7M3 94 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 ARL3P36405 182 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 SRSF3P84103 164 aaKnown RBP9.94□□□□□ -0.82
VPS13D-205ENST00000473099 RXFP4Q8TDU9 374 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 DUX5Q96PT3 197 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 UHRF2Q96PU4 802 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 SHANK2-AS3Q9BTD1 123 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 PAXXQ9BUH6 204 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 SLC25A39Q9BZJ4 359 aaPredicted RBP9.94□□□□□ -0.82
VPS13D-205ENST00000473099 NKX6-2Q9C056 277 aaPredicted RBP9.94□□□□□ -0.82
VPS13D-205ENST00000473099 OR51M1Q9H341 326 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 GNB4Q9HAV0 340 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 ESM1Q9NQ30 184 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 TMEM14CQ9P0S9 112 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 RABAC1Q9UI14 185 aa9.94□□□□□ -0.82
VPS13D-205ENST00000473099 PUS1Q9Y606 427 aaKnown RBP eCLIP9.94□□□□□ -0.82
VPS13D-205ENST00000473099 A0A1W2PRE2 83 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 PDE6DO43924 150 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 PAGE4O60829 102 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 SRP19P09132 144 aaKnown RBP9.93□□□□□ -0.82
VPS13D-205ENST00000473099 UBE2L3P68036 154 aaKnown RBP9.93□□□□□ -0.82
VPS13D-205ENST00000473099 C10orf91Q5T1B1 145 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 ZNF329Q86UD4 541 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 MYOZ3Q8TDC0 251 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 LINC00052Q96N35 136 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 RARRES2Q99969 163 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 KLK15Q9H2R5 256 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 SERTAD4Q9NUC0 356 aa9.93□□□□□ -0.82
VPS13D-205ENST00000473099 CARHSP1Q9Y2V2 147 aaKnown RBP9.93□□□□□ -0.82
VPS13D-205ENST00000473099 C11orf94C9JXX5 98 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 F6UZH7 168 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 NDUFA4O00483 81 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 GGCTO75223 188 aaKnown RBP9.92□□□□□ -0.82
VPS13D-205ENST00000473099 EIF3GO75821 320 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS13D-205ENST00000473099 USF2Q15853 346 aaPredicted RBP9.92□□□□□ -0.82
VPS13D-205ENST00000473099 SOHLH1Q5JUK2 328 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 TOMM20LQ6UXN7 152 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 Q6ZSV7 163 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 BPIFA4PQ86YQ2 179 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 OR4X2Q8NGF9 303 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 WFDC12Q8WWY7 111 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 UBE2E2Q96LR5 201 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 GPR82Q96P67 336 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 C16orf95Q9H693 158 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 ZFAND3Q9H8U3 227 aa9.92□□□□□ -0.82
VPS13D-205ENST00000473099 FAM74A7A6NL05 159 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 MORN5Q5VZ52 161 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 CST9LP1Q5W188 147 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 SVBPQ8N300 66 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 OR4F17Q8NGA8 305 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 OR4F5Q8NH21 305 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 ZNF503Q96F45 646 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 OR4F4Q96R69 305 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 METTL26Q96S19 204 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 TCEAL7Q9BRU2 100 aa9.91□□□□□ -0.82
VPS13D-205ENST00000473099 PEF1Q9UBV8 284 aaKnown RBP9.91□□□□□ -0.82
VPS13D-205ENST00000473099 TRAV5A0A0B4J249 113 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 ZNF98A6NK75 572 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 C9JQL5 133 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 NDUFA7O95182 113 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 IGHV3-11P01762 117 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 HIST1H1EP10412 219 aaKnown RBP9.9□□□□□ -0.82
VPS13D-205ENST00000473099 GP9P14770 177 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 RPL7P18124 248 aaKnown RBP9.9□□□□□ -0.82
VPS13D-205ENST00000473099 CD81P60033 236 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 UBE2G2P60604 165 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 FAM74A3Q4VXF1 159 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 KLHDC1Q8N7A1 406 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 FXYD5Q96DB9 178 aa9.9□□□□□ -0.82
VPS13D-205ENST00000473099 INAFM1C9JVW0 142 aa9.89□□□□□ -0.83
VPS13D-205ENST00000473099 PPP5D1E7EU14 171 aa9.89□□□□□ -0.83
VPS13D-205ENST00000473099 TCF21O43680 179 aa9.89□□□□□ -0.83
VPS13D-205ENST00000473099 APOC3P02656 99 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms