RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 LRTM2Q8N967 370 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 C7orf50Q9BRJ6 194 aaKnown RBP14.21□□□□□ -0.13
COL9A3-210ENST00000472880 WDR12Q9GZL7 423 aaKnown RBP14.21□□□□□ -0.13
COL9A3-210ENST00000472880 PAIP2BQ9ULR5 123 aaKnown RBP14.21□□□□□ -0.13
COL9A3-210ENST00000472880 DNAH6Q9C0G6 4158 aa14.21□□□□□ -0.13
COL9A3-210ENST00000472880 CENPXA8MT69 81 aa14.2□□□□□ -0.14
COL9A3-210ENST00000472880 IAPPP10997 89 aa14.2□□□□□ -0.14
COL9A3-210ENST00000472880 BTCP35070 178 aa14.2□□□□□ -0.14
COL9A3-210ENST00000472880 C1orf194Q5T5A4 169 aa14.2□□□□□ -0.14
COL9A3-210ENST00000472880 ZNF705AQ6ZN79 300 aaPredicted RBP14.2□□□□□ -0.14
COL9A3-210ENST00000472880 FOXI2Q6ZQN5 318 aa14.2□□□□□ -0.14
COL9A3-210ENST00000472880 NEU1Q99519 415 aa14.2□□□□□ -0.14
COL9A3-210ENST00000472880 SAV1Q9H4B6 383 aaPredicted RBP14.2□□□□□ -0.14
COL9A3-210ENST00000472880 IGHV3OR16-12A0A075B7B8 117 aa14.19□□□□□ -0.14
COL9A3-210ENST00000472880 TMEM189A5PLL7 270 aa14.19□□□□□ -0.14
COL9A3-210ENST00000472880 SNRPGP15A8MWD9 76 aa14.19□□□□□ -0.14
COL9A3-210ENST00000472880 FXYD7P58549 80 aa14.19□□□□□ -0.14
COL9A3-210ENST00000472880 DEFB1P60022 68 aa14.19□□□□□ -0.14
COL9A3-210ENST00000472880 UBE2MP61081 183 aaKnown RBP14.19□□□□□ -0.14
COL9A3-210ENST00000472880 OR2F1Q13607 317 aa14.19□□□□□ -0.14
COL9A3-210ENST00000472880 NDUFAF3Q9BU61 184 aa14.19□□□□□ -0.14
COL9A3-210ENST00000472880 A6NHS1 94 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 ZNF705FA8MVS1 300 aaPredicted RBP14.18□□□□□ -0.14
COL9A3-210ENST00000472880 PITX3O75364 302 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 ZNF705DP0CH99 300 aaPredicted RBP14.18□□□□□ -0.14
COL9A3-210ENST00000472880 ZNF705BP0CI00 300 aaPredicted RBP14.18□□□□□ -0.14
COL9A3-210ENST00000472880 EMP1P54849 157 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 CNPY1Q3B7I2 92 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 OR8I2Q8N0Y5 310 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 OR4B1Q8NGF8 309 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 TRGV9Q99603 122 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 FLVCR2Q9UPI3 526 aa14.18□□□□□ -0.14
COL9A3-210ENST00000472880 SMIM9A6NGZ8 99 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 SOCS3O14543 225 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 MED6O75586 246 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 SPART-AS1P0CW21 52 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 P0DMU3 169 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 FAM231AP0DMU4 169 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 FAM231CP0DMU5 169 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 SLC25A6P12236 298 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 SAMD13Q5VXD3 122 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 SPATA31B1PQ5VZV4 182 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 LINC00299Q6ZSB3 139 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 TMED3Q9Y3Q3 217 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 RFNGQ9Y644 331 aa14.17□□□□□ -0.14
COL9A3-210ENST00000472880 HECTD4Q9Y4D8 3996 aa14.16□□□□□ -0.14
COL9A3-210ENST00000472880 C9orf170A2RU37 121 aa14.16□□□□□ -0.14
COL9A3-210ENST00000472880 ISLRO14498 428 aa14.16□□□□□ -0.14
COL9A3-210ENST00000472880 PLA2G10O15496 165 aa14.16□□□□□ -0.14
COL9A3-210ENST00000472880 RPP30P78346 268 aaKnown RBP14.16□□□□□ -0.14
COL9A3-210ENST00000472880 EBLN2Q6P2I7 272 aa14.16□□□□□ -0.14
COL9A3-210ENST00000472880 CLUHP3Q96NS8 147 aa14.16□□□□□ -0.14
COL9A3-210ENST00000472880 CIB3Q96Q77 187 aaPredicted RBP14.16□□□□□ -0.14
COL9A3-210ENST00000472880 TEX48A0A1B0GUV7 120 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 CFDP00746 253 aaPredicted RBP14.15□□□□□ -0.14
COL9A3-210ENST00000472880 MEOX2P50222 304 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 ZNF709Q8N972 641 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 THAP8Q8NA92 274 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 CCDC32Q9BV29 185 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 SCRT1Q9BWW7 348 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 SLC35B3Q9H1N7 401 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 GOLT1BQ9Y3E0 138 aa14.15□□□□□ -0.14
COL9A3-210ENST00000472880 IGKV1OR2-108A0A075B7D4 117 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 LYRM1O43325 122 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 HOXB5P09067 269 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 OR4E1P0C645 316 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 GALR1P47211 349 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 PAX9P55771 341 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 PSG9Q00887 426 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 GGNBP1Q5YKI7 109 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 GSG1LQ6UXU4 331 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 LINC00336Q6ZUF6 198 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 POM121L12Q8N7R1 296 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 MAGT1Q9H0U3 335 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 SLC25A22Q9H936 323 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 RPRMQ9NS64 109 aa14.14□□□□□ -0.15
COL9A3-210ENST00000472880 F6UB75 175 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 WRBO00258 174 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 SYNGR2O43760 224 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 ANXA7P20073 488 aaKnown RBP14.13□□□□□ -0.15
COL9A3-210ENST00000472880 FAM78BQ5VT40 261 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 S100ZQ8WXG8 99 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 C16orf92Q96LL3 132 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 SLC25A32Q9H2D1 315 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 SLC45A2Q9UMX9 530 aa14.13□□□□□ -0.15
COL9A3-210ENST00000472880 A0A0J9YX75 114 aa14.12□□□□□ -0.15
COL9A3-210ENST00000472880 HBE1P02100 147 aa14.12□□□□□ -0.15
COL9A3-210ENST00000472880 AKR1C1Q04828 323 aa14.12□□□□□ -0.15
COL9A3-210ENST00000472880 BPIFCQ8NFQ6 507 aa14.12□□□□□ -0.15
COL9A3-210ENST00000472880 C20orf85Q9H1P6 137 aa14.12□□□□□ -0.15
COL9A3-210ENST00000472880 HERC2O95714 4834 aa14.12□□□□□ -0.15
COL9A3-210ENST00000472880 PRSS46E5RG02 174 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 ADAP1O75689 374 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 S100A7P31151 101 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 C4orf46Q504U0 113 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 SPANXN5Q5MJ07 72 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 FAM222AQ5U5X8 452 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 NIPSNAP3BQ9BS92 247 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 PTTG2Q9NZH5 202 aa14.11□□□□□ -0.15
COL9A3-210ENST00000472880 DOK5Q9P104 306 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms